PDB entry 6ey0

View 6ey0 on RCSB PDB site
Description: N-terminal part (residues 30-212) of PorM with the llama nanobody nb01
Class: protein transport
Keywords: Type IV Secretion System (T9SS), nanobody, PROTEIN TRANSPORT
Deposited on 2017-11-10, released 2018-02-07
The last revision prior to the SCOPe 2.08 freeze date was dated 2018-03-07, with a file datestamp of 2018-03-02.
Experiment type: XRAY
Resolution: 2.4 Å
R-factor: N/A
AEROSPACI score: 0.22 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: T9SS component cytoplasmic membrane protein PorM
    Species: Porphyromonas gingivalis [TaxId:837]
    Gene: porM, PGIN_15-9_01458
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: T9SS component cytoplasmic membrane protein PorM
    Species: Porphyromonas gingivalis [TaxId:837]
    Gene: porM, PGIN_15-9_01458
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: T9SS component cytoplasmic membrane protein PorM
    Species: Porphyromonas gingivalis [TaxId:837]
    Gene: porM, PGIN_15-9_01458
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: T9SS component cytoplasmic membrane protein PorM
    Species: Porphyromonas gingivalis [TaxId:837]
    Gene: porM, PGIN_15-9_01458
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: llama nanobody nb01
    Species: LAMA GLAMA [TaxId:9844]
    Database cross-references and differences (RAF-indexed):
    • PDB 6EY0
    Domains in SCOPe 2.08: d6ey0e1, d6ey0e2
  • Chain 'F':
    Compound: llama nanobody nb01
    Species: LAMA GLAMA [TaxId:9844]
    Database cross-references and differences (RAF-indexed):
    • PDB 6EY0
    Domains in SCOPe 2.08: d6ey0f1, d6ey0f2
  • Chain 'G':
    Compound: llama nanobody nb01
    Species: LAMA GLAMA [TaxId:9844]
    Database cross-references and differences (RAF-indexed):
    • PDB 6EY0
    Domains in SCOPe 2.08: d6ey0g1, d6ey0g2
  • Chain 'H':
    Compound: llama nanobody nb01
    Species: LAMA GLAMA [TaxId:9844]
    Database cross-references and differences (RAF-indexed):
    • PDB 6EY0
    Domains in SCOPe 2.08: d6ey0h1, d6ey0h2
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    No sequence available.

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    No sequence available.

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >6ey0E (E:)
madvqlvesggglvqaggslrvscaasgrtfssysmgwfrqapgkerefvaaisrsdnst
yyadsvkgrftisrdsakntvylqmnslkpedtavyycaatpygsryylrelreydywgq
gtqvtvsshhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >6ey0E (E:)
dvqlvesggglvqaggslrvscaasgrtfssysmgwfrqapgkerefvaaisrsdnstyy
adsvkgrftisrdsakntvylqmnslkpedtavyycaatpygsryylrelreydywgqgt
qvtvs

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >6ey0F (F:)
metadvqlvesggglvqaggslrvscaasgrtfssysmgwfrqapgkerefvaaisrsdn
styyadsvkgrftisrdsakntvylqmnslkpedtavyycaatpygsryylrelreydyw
gqgtqvtvsshhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >6ey0F (F:)
dvqlvesggglvqaggslrvscaasgrtfssysmgwfrqapgkerefvaaisrsdnstyy
adsvkgrftisrdsakntvylqmnslkpedtavyycaatpygsryylrelreydywgqgt
qvtvsshhhhh

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >6ey0G (G:)
madvqlvesggglvqaggslrvscaasgrtfssysmgwfrqapgkerefvaaisrsdnst
yyadsvkgrftisrdsakntvylqmnslkpedtavyycaatpygsryylrelreydywgq
gtqvtvsshhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >6ey0G (G:)
dvqlvesggglvqaggslrvscaasgrtfssysmgwfrqapgkerefvaaisrsdnstyy
adsvkgrftisrdsakntvylqmnslkpedtavyycaatpygsryylrelreydywgqgt
qvtvsshhh

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >6ey0H (H:)
madvqlvesggglvqaggslrvscaasgrtfssysmgwfrqapgkerefvaaisrsdnst
yyadsvkgrftisrdsakntvylqmnslkpedtavyycaatpygsryylrelreydywgq
gtqvtvsshhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >6ey0H (H:)
vqlvesggglvqaggslrvscaasgrtfssysmgwfrqapgkerefvaaisrsdnstyya
dsvkgrftisrdsakntvylqmnslkpedtavyycaatpygsryylrelreydywgqgtq
vtvs