PDB entry 6exh

View 6exh on RCSB PDB site
Description: crystal structure of the complex fe(ii)/alpha-ketoglutarate dependent dioxygenase kdo5 with fe(ii)/succinate/(4r)-4-hydroxy-l-lysine
Deposited on 2017-11-08, released 2018-11-14
The last revision was dated 2019-04-24, with a file datestamp of 2019-04-19.
Experiment type: XRAY
Resolution: 2.6 Å
R-factor: N/A
AEROSPACI score: 0.19 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: L-lysine 4-hydroxylase
    Species: Flavobacterium sp. [TaxId:239]
    Gene: PMI10_03368
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: L-lysine 4-hydroxylase
    Species: Flavobacterium sp. [TaxId:239]
    Gene: PMI10_03368
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: L-lysine 4-hydroxylase
    Species: Flavobacterium sp. [TaxId:239]
    Gene: PMI10_03368
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: L-lysine 4-hydroxylase
    Species: Flavobacterium sp. [TaxId:239]
    Gene: PMI10_03368
    Database cross-references and differences (RAF-indexed):
  • Heterogens: FE, LYO, SIN, GOL, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6exhA (A:)
mksqsimsversaetsltleiptspliikitqqernilsnvgnllvkafgnyenpdyias
lhlhafqllperitrilsqfgsdfsaeqygaivfqglievdqddlgptppnwqgadygkl
nkygficsllhgavpskpvqyyaqrkgggllhavipdekmaatqtgsgsktdlfvhteda
flsnqadflsflylrneervpstlysirshgkmnpvmkklfepiyqcpkdanyndedvan
sgptasvlygnrelpfirfdaaeqifnenagqtsealgnlmdfwdeaktlinsdyipnsg
dlifvnnhlcahgrsafiagqriengeiikcerrqmlrmmsktslihirsvtrtddpyfi
meehlgkifdld

    Sequence, based on observed residues (ATOM records):
    >6exhA (A:)
ltleiptspliikitqqernilsnvgnllvkafgnyenpdyiaslhlhafqllperitri
lsqfgsdfsaeqygaivfqglievdqddlgptppnwqgadygklnkygficsllhgavps
kpvqyyaqrkgggllhavipdekmaatqtgsgsktdlfvhtedaflsnqadflsflylrn
eervpstlysirshgkmnpvmkklfepiyqcpkdansgptasvlygnrelpfirfdaaeq
ifnenagqtsealgnlmdfwdeaktlinsdyipnsgdlifvnnhlcahgrsafiagqrie
ngeiikcerrqmlrmmsktslihirsvtrtddpyfimeehlgkifdld

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6exhB (B:)
mksqsimsversaetsltleiptspliikitqqernilsnvgnllvkafgnyenpdyias
lhlhafqllperitrilsqfgsdfsaeqygaivfqglievdqddlgptppnwqgadygkl
nkygficsllhgavpskpvqyyaqrkgggllhavipdekmaatqtgsgsktdlfvhteda
flsnqadflsflylrneervpstlysirshgkmnpvmkklfepiyqcpkdanyndedvan
sgptasvlygnrelpfirfdaaeqifnenagqtsealgnlmdfwdeaktlinsdyipnsg
dlifvnnhlcahgrsafiagqriengeiikcerrqmlrmmsktslihirsvtrtddpyfi
meehlgkifdld

    Sequence, based on observed residues (ATOM records):
    >6exhB (B:)
leiptspliikitqqernilsnvgnllvkafgnyenpdyiaslhlhafqllperitrils
qfgsdfsaeqygaivfqglievdqddlgptppnwqgadygklnkygficsllhgavpskp
vqyyaqrkgggllhavipdekmaatqtgsgsktdlfvhtedaflsnqadflsflylrnee
rvpstlysirshgkmnpvmkklfepiyqcpkgptasvlygnrelpfirfdaaeqifnena
gqtsealgnlmdfwdeaktlinsdyipnsgdlifvnnhlcahgrsafiagqiikcerrqm
lrmmsktslihirsvtrtddpyfimeehlgkifdld

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6exhC (C:)
mksqsimsversaetsltleiptspliikitqqernilsnvgnllvkafgnyenpdyias
lhlhafqllperitrilsqfgsdfsaeqygaivfqglievdqddlgptppnwqgadygkl
nkygficsllhgavpskpvqyyaqrkgggllhavipdekmaatqtgsgsktdlfvhteda
flsnqadflsflylrneervpstlysirshgkmnpvmkklfepiyqcpkdanyndedvan
sgptasvlygnrelpfirfdaaeqifnenagqtsealgnlmdfwdeaktlinsdyipnsg
dlifvnnhlcahgrsafiagqriengeiikcerrqmlrmmsktslihirsvtrtddpyfi
meehlgkifdld

    Sequence, based on observed residues (ATOM records):
    >6exhC (C:)
tsltleiptspliikitqqernilsnvgnllvkafgnyenpdyiaslhlhafqllperit
rilsqfgsdfsaeqygaivfqglievdqddlgptppnwqgadygklnkygficsllhgav
pskpvqyyaqrkgggllhavipdekmaatqtgsgsktdlfvhtedaflsnqadflsflyl
rneervpstlysirshgkmnpvmkklfepiyqcpkdanyansgptasvlygnrelpfirf
daaeqifnenagqtsealgnlmdfwdeaktlinsdyipnsgdlifvnnhlcahgrsafia
gqriengeiikcerrqmlrmmsktslihirsvtrtddpyfimeehlgkifdld

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6exhD (D:)
mksqsimsversaetsltleiptspliikitqqernilsnvgnllvkafgnyenpdyias
lhlhafqllperitrilsqfgsdfsaeqygaivfqglievdqddlgptppnwqgadygkl
nkygficsllhgavpskpvqyyaqrkgggllhavipdekmaatqtgsgsktdlfvhteda
flsnqadflsflylrneervpstlysirshgkmnpvmkklfepiyqcpkdanyndedvan
sgptasvlygnrelpfirfdaaeqifnenagqtsealgnlmdfwdeaktlinsdyipnsg
dlifvnnhlcahgrsafiagqriengeiikcerrqmlrmmsktslihirsvtrtddpyfi
meehlgkifdld

    Sequence, based on observed residues (ATOM records):
    >6exhD (D:)
ltleiptspliikitqqernilsnvgnllvkafgnyenpdyiaslhlhafqllperitri
lsqfgsdfsaeqygaivfqglievdqddlgptppnwqgadygklnkygficsllhgavps
kpvqyyaqrkgggllhavipdekmaatqtgsgsktdlfvhtedaflsnqadflsflylrn
eervpstlysirshgkmnpvmkklfepiyqcpkdanynsgptasvlygnrelpfirfdaa
eqifnenagqtsealgnlmdfwdeaktlinsdyipnsgdlifvnnhlcahgrsafiagqr
iengeiikcerrqmlrmmsktslihirsvtrtddpyfimeehlgkifdld