PDB entry 6exf

View 6exf on RCSB PDB site
Description: crystal structure of the complex fe(ii)/alpha-ketoglutarate dependent dioxygenase kdo5 with fe(ii)/lysine
Deposited on 2017-11-08, released 2018-11-14
The last revision was dated 2018-11-21, with a file datestamp of 2018-11-16.
Experiment type: XRAY
Resolution: 1.95 Å
R-factor: N/A
AEROSPACI score: 0.32 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: L-lysine 4-hydroxylase
    Species: Flavobacterium sp. [TaxId:239]
    Gene: PMI10_03368
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: L-lysine 4-hydroxylase
    Species: Flavobacterium sp. [TaxId:239]
    Gene: PMI10_03368
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: L-lysine 4-hydroxylase
    Species: Flavobacterium sp. [TaxId:239]
    Gene: PMI10_03368
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: L-lysine 4-hydroxylase
    Species: Flavobacterium sp. [TaxId:239]
    Gene: PMI10_03368
    Database cross-references and differences (RAF-indexed):
  • Heterogens: FE, LYS, GOL, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6exfA (A:)
mksqsimsversaetsltleiptspliikitqqernilsnvgnllvkafgnyenpdyias
lhlhafqllperitrilsqfgsdfsaeqygaivfqglievdqddlgptppnwqgadygkl
nkygficsllhgavpskpvqyyaqrkgggllhavipdekmaatqtgsgsktdlfvhteda
flsnqadflsflylrneervpstlysirshgkmnpvmkklfepiyqcpkdanyndedvan
sgptasvlygnrelpfirfdaaeqifnenagqtsealgnlmdfwdeaktlinsdyipnsg
dlifvnnhlcahgrsafiagqriengeiikcerrqmlrmmsktslihirsvtrtddpyfi
meehlgkifdld

    Sequence, based on observed residues (ATOM records):
    >6exfA (A:)
leiptspliikitqqernilsnvgnllvkafgnyenpdyiaslhlhafqllperitrils
qfgsdfsaeqygaivfqglievdqddlgptppnwqgadygklnkygficsllhgavpskp
vqyyaqrkgggllhavipdekmaatqtgsgsktdlfvhtedaflsnqadflsflylrnee
rvpstlysirshgkmnpvmkklfepiyqcpkdsgptasvlygnrelpfirfdaaeqifne
nagqtsealgnlmdfwdeaktlinsdyipnsgdlifvnnhlcahgrsafiagqriengei
ikcerrqmlrmmsktslihirsvtrtddpyfimeehlgkifdl

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6exfB (B:)
mksqsimsversaetsltleiptspliikitqqernilsnvgnllvkafgnyenpdyias
lhlhafqllperitrilsqfgsdfsaeqygaivfqglievdqddlgptppnwqgadygkl
nkygficsllhgavpskpvqyyaqrkgggllhavipdekmaatqtgsgsktdlfvhteda
flsnqadflsflylrneervpstlysirshgkmnpvmkklfepiyqcpkdanyndedvan
sgptasvlygnrelpfirfdaaeqifnenagqtsealgnlmdfwdeaktlinsdyipnsg
dlifvnnhlcahgrsafiagqriengeiikcerrqmlrmmsktslihirsvtrtddpyfi
meehlgkifdld

    Sequence, based on observed residues (ATOM records):
    >6exfB (B:)
leiptspliikitqqernilsnvgnllvkafgnyenpdyiaslhlhafqllperitrils
qfgsdfsaeqygaivfqglievdqddlgptppnwqgadygklnkygficsllhgavpskp
vqyyaqrkgggllhavgsktdlfvhtedaflsnqadflsflylrneervpstlysirshg
kmnpvmkklfepiyqcpkdgptasvlygnrelpfirfdaaeqifnenagqtsealgnlmd
fwdeaktlinsdyipnsgdlifvnnhlcahgrscerrqmlrmmsktslihirsvtrtddp
yfimeehlgkifdld

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6exfC (C:)
mksqsimsversaetsltleiptspliikitqqernilsnvgnllvkafgnyenpdyias
lhlhafqllperitrilsqfgsdfsaeqygaivfqglievdqddlgptppnwqgadygkl
nkygficsllhgavpskpvqyyaqrkgggllhavipdekmaatqtgsgsktdlfvhteda
flsnqadflsflylrneervpstlysirshgkmnpvmkklfepiyqcpkdanyndedvan
sgptasvlygnrelpfirfdaaeqifnenagqtsealgnlmdfwdeaktlinsdyipnsg
dlifvnnhlcahgrsafiagqriengeiikcerrqmlrmmsktslihirsvtrtddpyfi
meehlgkifdld

    Sequence, based on observed residues (ATOM records):
    >6exfC (C:)
etsltleiptspliikitqqernilsnvgnllvkafgnyenpdyiaslhlhafqllperi
trilsqfgsdfsaeqygaivfqglievdqddlgptppnwqgadygklnkygficsllhga
vpskpvqyyaqrkgggllhavipdekmaatqtgsgsktdlfvhtedaflsnqadflsfly
lrneervpstlysirshgkmnpvmkklfepiyqcpkdanysgptasvlygnrelpfirfd
aaeqifnenagqtsealgnlmdfwdeaktlinsdyipnsgdlifvnnhlcahgrsafiag
qriengeiikcerrqmlrmmsktslihirsvtrtddpyfimeehlgkifdld

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6exfD (D:)
mksqsimsversaetsltleiptspliikitqqernilsnvgnllvkafgnyenpdyias
lhlhafqllperitrilsqfgsdfsaeqygaivfqglievdqddlgptppnwqgadygkl
nkygficsllhgavpskpvqyyaqrkgggllhavipdekmaatqtgsgsktdlfvhteda
flsnqadflsflylrneervpstlysirshgkmnpvmkklfepiyqcpkdanyndedvan
sgptasvlygnrelpfirfdaaeqifnenagqtsealgnlmdfwdeaktlinsdyipnsg
dlifvnnhlcahgrsafiagqriengeiikcerrqmlrmmsktslihirsvtrtddpyfi
meehlgkifdld

    Sequence, based on observed residues (ATOM records):
    >6exfD (D:)
ltleiptspliikitqqernilsnvgnllvkafgnyenpdyiaslhlhafqllperitri
lsqfgsdfsaeqygaivfqglievdqddlgptppnwqgadygklnkygficsllhgavps
kpvqyyaqrkgggllhavipdekmaatqtgsgsktdlfvhtedaflsnqadflsflylrn
eervpstlysirshgkmnpvmkklfepiyqcpkdsgptasvlygnrelpfirfdaaeqif
nenagqtsealgnlmdfwdeaktlinsdyipnsgdlifvnnhlcahgrsafiagqrieng
eiikcerrqmlrmmsktslihirsvtrtddpyfimeehlgkifdld