PDB entry 6ew9

View 6ew9 on RCSB PDB site
Description: crystal structure of degs stress sensor protease in complex with activating dnrlglvyqf peptide
Deposited on 2017-11-03, released 2018-04-25
The last revision was dated 2018-11-07, with a file datestamp of 2018-11-02.
Experiment type: XRAY
Resolution: 2.2 Å
R-factor: N/A
AEROSPACI score: 0.26 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Serine endoprotease DegS
    Species: Escherichia coli K-12 [TaxId:83333]
    Gene: degS, hhoB, htrH, b3235, JW3204
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0AEE3 (2-End)
      • expression tag (0-1)
  • Chain 'B':
    Compound: Serine endoprotease DegS
    Species: Escherichia coli K-12 [TaxId:83333]
    Gene: degS, hhoB, htrH, b3235, JW3204
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0AEE3 (2-End)
      • expression tag (0-1)
  • Chain 'C':
    Compound: Serine endoprotease DegS
    Species: Escherichia coli K-12 [TaxId:83333]
    Gene: degS, hhoB, htrH, b3235, JW3204
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0AEE3 (2-End)
      • expression tag (0-1)
  • Chain 'P':
    Compound: dnrlglvyqf peptide
    Species: synthetic construct, synthetic [TaxId:32630]
    Database cross-references and differences (RAF-indexed):
    • PDB 6EW9 (Start-9)
  • Chain 'Q':
    Compound: dnrlglvyqf peptide
    Species: synthetic construct, synthetic [TaxId:32630]
    Database cross-references and differences (RAF-indexed):
    • PDB 6EW9 (Start-9)
  • Chain 'R':
    Compound: dnrlglvyqf peptide
    Species: synthetic construct, synthetic [TaxId:32630]
    Database cross-references and differences (RAF-indexed):
    • PDB 6EW9 (Start-9)
  • Heterogens: PEG, CA, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6ew9A (A:)
gptpasynlavrraapavvnvynrglntnshnqleirtlgsgvimdqrgyiitnkhvind
adqiivalqdgrvfeallvgsdsltdlavlkinatgglptipinarrvphigdvvlaign
pynlgqtitqgiisatgriglnptgrqnflqtdasinhgnsggalvnslgelmgintlsf
dksndgetpegigfaipfqlatkimdklirdgrvirgyigiggreiaplhaqgggidqlq
givvnevspdgpaanagiqvndliisvdnkpaisaletmdqvaeirpgsvipvvvmrddk
qltlqvtiqeypatn

    Sequence, based on observed residues (ATOM records):
    >6ew9A (A:)
gptpasynlavrraapavvnvynrglqleirtlgsgvimdqrgyiitnkhvindadqiiv
alqdgrvfeallvgsdsltdlavlkinatgglptipinarrvphigdvvlaignpynlgq
titqgiisatgriglnptgrqnflqtdasinhgnsggalvnslgelmgintlsfdksndg
etpegigfaipfqlatkimdklirdgrvirgyigiggreiaplgggidqlqgivvnevsp
dgpaanagiqvndliisvdnkpaisaletmdqvaeirpgsvipvvvmrddkqltlqvtiq
eypat

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6ew9B (B:)
gptpasynlavrraapavvnvynrglntnshnqleirtlgsgvimdqrgyiitnkhvind
adqiivalqdgrvfeallvgsdsltdlavlkinatgglptipinarrvphigdvvlaign
pynlgqtitqgiisatgriglnptgrqnflqtdasinhgnsggalvnslgelmgintlsf
dksndgetpegigfaipfqlatkimdklirdgrvirgyigiggreiaplhaqgggidqlq
givvnevspdgpaanagiqvndliisvdnkpaisaletmdqvaeirpgsvipvvvmrddk
qltlqvtiqeypatn

    Sequence, based on observed residues (ATOM records):
    >6ew9B (B:)
gptpasynlavrraapavvnvynrtlgsgvimdqrgyiitnkhvindadqiivalqdgrv
feallvgsdsltdlavlkinatgglptipinarrvphigdvvlaignpynlgqtitqgii
satgriglnptgrqnflqtdasinhgnsggalvnslgelmgintlsfdksndgetpegig
faipfqlatkimdklirdgrvirgyigiggreiidqlqgivvnevspdgpaanagiqvnd
liisvdnkpaisaletmdqvaeirpgsvipvvvmrddkqltlqvtiqeypat

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6ew9C (C:)
gptpasynlavrraapavvnvynrglntnshnqleirtlgsgvimdqrgyiitnkhvind
adqiivalqdgrvfeallvgsdsltdlavlkinatgglptipinarrvphigdvvlaign
pynlgqtitqgiisatgriglnptgrqnflqtdasinhgnsggalvnslgelmgintlsf
dksndgetpegigfaipfqlatkimdklirdgrvirgyigiggreiaplhaqgggidqlq
givvnevspdgpaanagiqvndliisvdnkpaisaletmdqvaeirpgsvipvvvmrddk
qltlqvtiqeypatn

    Sequence, based on observed residues (ATOM records):
    >6ew9C (C:)
gptpasynlavrraapavvnvynrglntnshnqleirtlgsgvimdqrgyiitnkhvind
adqiivalqdgrvfeallvgsdsltdlavlkinatgglptipinarrvphigdvvlaign
pynlgqtitqgiisatgriglnptgrqnflqtdasinhgnsggalvnslgelmgintlsf
dksndgetpegigfaipfqlatkimdklirdgrvirgyigiggreilqgivvnevspdgp
aanagiqvndliisvdnkpaisaletmdqvaeirpgsvipvvvmrddkqltlqvtiqeyp
at

  • Chain 'P':
    Sequence, based on SEQRES records:
    >6ew9P (P:)
dnrlglvyqf

    Sequence, based on observed residues (ATOM records):
    >6ew9P (P:)
lvyqf

  • Chain 'Q':
    Sequence, based on SEQRES records:
    >6ew9Q (Q:)
dnrlglvyqf

    Sequence, based on observed residues (ATOM records):
    >6ew9Q (Q:)
lvyqf

  • Chain 'R':
    Sequence, based on SEQRES records:
    >6ew9R (R:)
dnrlglvyqf

    Sequence, based on observed residues (ATOM records):
    >6ew9R (R:)
lvyqf