PDB entry 6evk

View 6evk on RCSB PDB site
Description: crystal structure of bat influenza a/h17n10 polymerase with viral rna promoter and cap analogue m7gtp
Deposited on 2017-11-01, released 2017-12-13
The last revision was dated 2018-02-07, with a file datestamp of 2018-02-02.
Experiment type: XRAY
Resolution: 2.9 Å
R-factor: N/A
AEROSPACI score: 0.15 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Polymerase acidic protein
    Species: Influenza A virus (A/little yellow-shouldered bat/Guatemala/060/2010(H17N10)) [TaxId:1129347]
    Gene: PA
    Database cross-references and differences (RAF-indexed):
    • Uniprot H6QM92 (14-726)
      • expression tag (727)
  • Chain 'B':
    Compound: RNA-directed RNA polymerase catalytic subunit
    Species: Influenza A virus (A/little yellow-shouldered bat/Guatemala/060/2010(H17N10)) [TaxId:1129347]
    Gene: Pb1
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Polymerase basic protein 2
    Species: Influenza A virus (A/little yellow-shouldered bat/Guatemala/060/2010(H17N10)) [TaxId:1129347]
    Gene: pb2
    Database cross-references and differences (RAF-indexed):
    • Uniprot H6QM90 (9-End)
      • expression tag (7-8)
  • Chain 'R':
    Compound: RNA (5'-r(*up*ap*up*ap*cp*cp*up*cp*up*gp*cp*up*u)-3')
    Species: Influenza A virus, synthetic [TaxId:11320]
  • Chain 'V':
    Compound: RNA (5'-r(p*ap*gp*up*ap*gp*up*ap*ap*cp*ap*ap*gp*ap*gp*gp*g)-3')
    Species: Influenza A virus, synthetic [TaxId:11320]
  • Heterogens: MGP, ZN, PO4, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6evkA (A:)
    gshhhhhhhhgsgsmenfvrtnfnpmileraektmkeygenpqnegnkfaaisthmevcf
    mysdfhfidlegntivkendddnamlkhrfeiiegqerniawtivnsicnmtenskprfl
    pdlydyktnkfieigvtrrkvedyyyekasklkgenvyihifsfdgeematddeyildee
    srariktrlfvlrqelataglwdsfrqsekgeetleeefsypptfqrlanqslppsfkdy
    hqfkayvssfkangnieaklgamsekvnaqiesfdprtirelelpegkfctqrskfllmd
    amklsvlnpahegegipmkdakacldtfwgwkkatiikkhekgvntnylmiweqllesik
    emegkflnlkktnhlkwglgegqapekmdfedckevpdlfqykseppekrklaswiqsef
    nkaseltnsnwiefdelgndvapiehiasrrrnfftaevsqcraseyimkavyintalln
    ssctameeyqvipiitkcrdtsgqrrtnlygfiikgrshlrndtdvvnfislefsltdpr
    neihkwekycvleigdmeirtsistimkpvylyvrtngtskikmkwgmemrrcllqslqq
    vesmieaesavkekdmtepffrnrendwpigespqgiekgtigkvcrvllaksvfnsiya
    saqlegfsaesrklllliqafrdnldpgtfdlkglyeaieeciindpwvllnaswfnsfl
    kavqlsmgsgsgenlyfq
    

    Sequence, based on observed residues (ATOM records):
    >6evkA (A:)
    menfvrtnfnpmileraektmkeygenpqnegnkfaaisthmevcfmysdfhfidlegnt
    ivkendddnamlkhrfeiiegqerniawtivnsicnmtenskprflpdlydyktnkfiei
    gvtrrkvedyyyekasklkgenvyihifsfdgeematddeyildeesrariktrlfvlrq
    elataleeefsypptfqrlanqslppsfkdyhqfkayvssfkangnieaklgamsekvna
    qiesfdprtirelelpegkfctqrskfllmdamklsvlnpahegegipmkdakacldtfw
    gwkkatiikkhekgvntnylmiweqllesikemegkflnlkktnhlkwglgegqapekmd
    fedckevpdlfqykseppekrklaswiqsefnkaseltnsnwiefdelgndvapiehias
    rrrnfftaevsqcraseyimkavyintallnssctameeyqvipiitkcrdtsgqrrtnl
    ygfiikgrshlrndtdvvnfislefsltdprneihkwekycvleigdmeirtsistimkp
    vylyvrtngtskikmkwgmemrrcllqslqqvesmieaesavkekdmtepffrnrendwp
    igespqgiekgtigkvcrvllaksvfnsiyasaqlegfsaesrklllliqafrdnldpgt
    fdlkglyeaieeciindpwvllnaswfnsflkavqlsmg
    

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6evkB (B:)
    gsgsgsgsgmdvnpmliflkvpvqnaisttfpytgdppyshgtgtgytmdtvirthdyss
    rgiwktnsetgaqqlnpidgplpednepsgyaqtdcvleliegldrshpglfetacqeti
    daiqqtrvdkltqgrqtydwtlnrnqpaatalantievfrkngyklnesgrlidflkdvl
    lsfendsmevtthfqkkkrirdnhskkmitqrtigkkrvkltkknyliraltlntmtkda
    ergklkrraiatpgmqirgfvyfvellarnicerleqsglpvggnekkaklanvikkmma
    kstdeelsytitgdntkwnenqnpriflamvlritagqpewfrdllavapimfsnkvarl
    grgymfesksmhlrtqisaenlsdinlryfnedtkkkiekirhlmvegtaslspgmmmgm
    fnmlstvlgvsvlnlgqreilkrtywwdglqssddfaliinghfkediqqgvnhfyrtck
    lvginmsqkksyinktgtfeftsffyrygfvanfsmelpsfgvagnnesadmsigttvik
    tnminndlgpataqmaiqlfikdyrytyrchrgdtnletrrtksikrlwtetiskagllv
    adggpnpynlrnlhipevclkwslmdpdyrgrlcnpnnpfvhhmevestnlavvmpahgp
    aksleydavatthswtpkrnrsilntnqrgilederiyqkccqvfekffpsstyrrpigm
    asmldamlsraridaridlesgrissqdfseitntckaiealkrqgsgsgenlyfq
    

    Sequence, based on observed residues (ATOM records):
    >6evkB (B:)
    mdvnpmliflkvpvqnaisttfpytgdppyshgtgtgytmdtvirthdyssrgiwktnse
    tgaqqlnpidgplpednepsgyaqtdcvleliegldrshpglfetacqetidaiqqtrvd
    kltqgrqtydwtlnrnqpaatalantievfrkngyklnesgrlidflkdvllsfendsme
    vtthfqkkkrirdnmitqrtigkkrvkltkknyliraltlntmtkdaergklkrraiatp
    gmqirgfvyfvellarnicerleqsglpvggnekkaklanvikkmmakstdeelsytitg
    dntkwnenqnpriflamvlritagqpewfrdllavapimfsnkvarlgrgymfesksmhl
    rtqisaenlsdinlryfnedtkkkiekirhlmvegtaslspgmmmgmfnmlstvlgvsvl
    nlgqreilkrtywwdglqssddfaliinghfkediqqgvnhfyrtcklvginmsqkksyi
    nktgtfeftsffyrygfvanfsmelpsfgvagnnesadmsigttviktnminndlgpata
    qmaiqlfikdyrytyrchrgdtnletrrtksikrlwtetiskagllvadggpnpynlrnl
    hipevclkwslmdpdyrgrlcnpnnpfvhhmevestnlavvmpgpaksleydavatthsw
    tpkrnrsilntnqrgilederiyqkccqvfekffpsstyrrpigmasmldamlsrarida
    ridlesgrissqdfseitntckaiealk
    

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6evkC (C:)
    gsgsgsgsgmerikelmemvknsrmreiltttsvdhmavikkytsgrqeknpalrmkwmm
    amkypisassriremipekdedgntlwtntkdagsnrvlvspnavtwwnragpvsdvvhy
    prvykmyfdrlerlthgtfgpvkfynqvkvrkrvdinpghkdltsreaqevimevvfpne
    vgartlssdaqltitkekkeelknckispimvaymlerelvrrtrflpiagatsstyvev
    lhltqgtcweqqytpggeaenddldqtliiasrnivrrsivaidplasllsmchttsiss
    eplveilrsnptdeqavnickaalgirinnsfsfggynfkrvkgssqrtekavltgnlqt
    ltmtifegyeefnvsgkrasavlkkgaqrliqaiiggrtledilnlmitlmvfsqeekml
    kavrgdlnfvnranqrlnpmyqllrhfqkdsstllknwgteeidpimgiagimpdgtink
    tqtlmgvrlsqggvdeysfnerirvnidkylrvrnekgellispeevseaqgqeklpiny
    nsslmwevngpesiltntyhwiiknwellktqwmtdptvlynriefepfqtlipkgnrai
    ysgftrtlfqqmrdvegtfdsiqiikllpfsahppslgrtqfssftlnirgaplrllirg
    nsqvfnynqmenviivlgksvgspersiltesssiesavlrgflilgkanskygpvltig
    eldklgrgekanvligqgdtvlvmkrkrdssiltdsqtalkrirleeskgwshpqfekgg
    gsgggsggsawshpqfekgrsggenlyfq
    

    Sequence, based on observed residues (ATOM records):
    >6evkC (C:)
    sgmerikelmemvknsrmreiltttsvdhmavikkytsgrqeknpalrmkwmmamkypis
    assriremipekdedgntlwtntkdagsnrvlvspnavtwwnragpvsdvvhyprvykmy
    fdrlerlthgtfgpvkfynqvkvrkrvdinpghkdltsreaqevimevvfpnevgartls
    sdaqltitkekkeelknckispimvaymlerelvrrtrflpiagatsstyvevlhltqgt
    cweqqytpggeaenddldqtliiasrnivrrsivaidplasllsmchttsisseplveil
    rsnptdeqavnickaalgirinsfsfggynfkrvkgssqrtekavltgnlqtltmtifeg
    yeefnvsgkrasavlkkgaqrliqaiiggrtledilnlmitlmvfsqeekmlkavrgdln
    fvnqrlnpmyqllrhfqkdsstllknwgteeidpimgiagimpdgtinktqtlmgvrlsq
    rvnidkylrvrnekgellispeevseaqgqeklpinynsslmwevngpesiltntyhwii
    knwellktqwmtdptvlynriefepfqtlipkgnraiysgftrtlfqqmrdvegtfdsiq
    iikllpfsahppslgrtqfssftlnirgaplrllirgnsqvfnynqmenviivlgksvgs
    persiltesssiesavlrgflilgkanskygpvltigeldklgrgekanvligqgdtvlv
    mkrkrds
    

  • Chain 'R':
    No sequence available.

  • Chain 'V':
    No sequence available.