PDB entry 6eur

View 6eur on RCSB PDB site
Description: crystal structure of the complex fe(ii)/alpha-ketoglutarate dependent dioxygenase kdo5 with fe(ii)/alpha-ketoglutarate
Deposited on 2017-10-31, released 2018-11-14
The last revision was dated 2018-11-21, with a file datestamp of 2018-11-16.
Experiment type: XRAY
Resolution: 2.3 Å
R-factor: N/A
AEROSPACI score: 0.24 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: L-lysine 4-hydroxylase
    Species: Flavobacterium sp. (strain CF136) [TaxId:1144313]
    Gene: PMI10_03368
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: L-lysine 4-hydroxylase
    Species: Flavobacterium sp. (strain CF136) [TaxId:1144313]
    Gene: PMI10_03368
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: L-lysine 4-hydroxylase
    Species: Flavobacterium sp. (strain CF136) [TaxId:1144313]
    Gene: PMI10_03368
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: L-lysine 4-hydroxylase
    Species: Flavobacterium sp. (strain CF136) [TaxId:1144313]
    Gene: PMI10_03368
    Database cross-references and differences (RAF-indexed):
  • Heterogens: FE, AKG, GOL, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6eurA (A:)
mksqsimsversaetsltleiptspliikitqqernilsnvgnllvkafgnyenpdyias
lhlhafqllperitrilsqfgsdfsaeqygaivfqglievdqddlgptppnwqgadygkl
nkygficsllhgavpskpvqyyaqrkgggllhavipdekmaatqtgsgsktdlfvhteda
flsnqadflsflylrneervpstlysirshgkmnpvmkklfepiyqcpkdanyndedvan
sgptasvlygnrelpfirfdaaeqifnenagqtsealgnlmdfwdeaktlinsdyipnsg
dlifvnnhlcahgrsafiagqriengeiikcerrqmlrmmsktslihirsvtrtddpyfi
meehlgkifdld

    Sequence, based on observed residues (ATOM records):
    >6eurA (A:)
leiptspliikitqqernilsnvgnllvkafgnyenpdyiaslhlhafqllperitrils
qfgsdfsaeqygaivfqglievdqddlgptppnwqgadygklnkygficsllhgavpskp
vqyyaqrkgggllhavipdekmaatqtgsgsktdlfvhtedaflsnqadflsflylrnee
rvpstlysirshgkmnpvmkklfepiyqcpksgptasvlygnrelpfirfdaaeqifnen
agqtsealgnlmdfwdeaktlinsdyipnsgdlifvnnhlcahgrsafiagqriengeii
kcerrqmlrmmsktslihirsvtrtddpyfimeehlgkifdld

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6eurB (B:)
mksqsimsversaetsltleiptspliikitqqernilsnvgnllvkafgnyenpdyias
lhlhafqllperitrilsqfgsdfsaeqygaivfqglievdqddlgptppnwqgadygkl
nkygficsllhgavpskpvqyyaqrkgggllhavipdekmaatqtgsgsktdlfvhteda
flsnqadflsflylrneervpstlysirshgkmnpvmkklfepiyqcpkdanyndedvan
sgptasvlygnrelpfirfdaaeqifnenagqtsealgnlmdfwdeaktlinsdyipnsg
dlifvnnhlcahgrsafiagqriengeiikcerrqmlrmmsktslihirsvtrtddpyfi
meehlgkifdld

    Sequence, based on observed residues (ATOM records):
    >6eurB (B:)
eiptspliikitqqernilsnvgnllvkafgnyenpdyiaslhlhafqllperitrilsq
fgsdfsaeqygaivfqglievdqddlgptppnwqgadygklnkygficsllhgavpskpv
qyyaqrkgggllhavipdekmaatqtgsgsktdlfvhtedaflsnqadflsflylrneer
vpstlysirshgkmnpvmkklfepiyqcpkgptasvlygnrelpfirfdaaeqifnenag
qtsealgnlmdfwdeaktlinsdyipnsgdlifvnnhlcahgriikcerrqmlrmmskts
lihirsvtrtddpyfimeehlgkifdld

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6eurC (C:)
mksqsimsversaetsltleiptspliikitqqernilsnvgnllvkafgnyenpdyias
lhlhafqllperitrilsqfgsdfsaeqygaivfqglievdqddlgptppnwqgadygkl
nkygficsllhgavpskpvqyyaqrkgggllhavipdekmaatqtgsgsktdlfvhteda
flsnqadflsflylrneervpstlysirshgkmnpvmkklfepiyqcpkdanyndedvan
sgptasvlygnrelpfirfdaaeqifnenagqtsealgnlmdfwdeaktlinsdyipnsg
dlifvnnhlcahgrsafiagqriengeiikcerrqmlrmmsktslihirsvtrtddpyfi
meehlgkifdld

    Sequence, based on observed residues (ATOM records):
    >6eurC (C:)
tsltleiptspliikitqqernilsnvgnllvkafgnyenpdyiaslhlhafqllperit
rilsqfgsdfsaeqygaivfqglievdqddlgptppnwqgadygklnkygficsllhgav
pskpvqyyaqrkgggllhavipdekmaatqtgsgsktdlfvhtedaflsnqadflsflyl
rneervpstlysirshgkmnpvmkklfepiyqcpkgptasvlygnrelpfirfdaaeqif
nenagqtsealgnlmdfwdeaktlinsdyipnsgdlifvnnhlcahgrsafiagqrieng
eiikcerrqmlrmmsktslihirsvtrtddpyfimeehlgkifdld

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6eurD (D:)
mksqsimsversaetsltleiptspliikitqqernilsnvgnllvkafgnyenpdyias
lhlhafqllperitrilsqfgsdfsaeqygaivfqglievdqddlgptppnwqgadygkl
nkygficsllhgavpskpvqyyaqrkgggllhavipdekmaatqtgsgsktdlfvhteda
flsnqadflsflylrneervpstlysirshgkmnpvmkklfepiyqcpkdanyndedvan
sgptasvlygnrelpfirfdaaeqifnenagqtsealgnlmdfwdeaktlinsdyipnsg
dlifvnnhlcahgrsafiagqriengeiikcerrqmlrmmsktslihirsvtrtddpyfi
meehlgkifdld

    Sequence, based on observed residues (ATOM records):
    >6eurD (D:)
tleiptspliikitqqernilsnvgnllvkafgnyenpdyiaslhlhafqllperitril
sqfgsdfsaeqygaivfqglievdqddlgptppnwqgadygklnkygficsllhgavpsk
pvqyyaqrkgggllhavipdekmaatqtgsgsktdlfvhtedaflsnqadflsflylrne
ervpstlysirshgkmnpvmkklfepiyqcpkdgptasvlygnrelpfirfdaaeqifne
nagqtsealgnlmdfwdeaktlinsdyipnsgdlifvnnhlcahgrsafiagqriengei
ikcerrqmlrmmsktslihirsvtrtddpyfimeehlgkifdld