PDB entry 6euo

View 6euo on RCSB PDB site
Description: crystal structure of apo fe(ii)/alpha-ketoglutarate dependent dioxygenase kdo5
Deposited on 2017-10-30, released 2018-11-14
The last revision was dated 2018-11-21, with a file datestamp of 2018-11-16.
Experiment type: XRAY
Resolution: 2.3 Å
R-factor: N/A
AEROSPACI score: 0.24 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: L-lysine 4-hydroxylase
    Species: Flavobacterium sp. (strain CF136) [TaxId:1144313]
    Gene: PMI10_03368
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: L-lysine 4-hydroxylase
    Species: Flavobacterium sp. (strain CF136) [TaxId:1144313]
    Gene: PMI10_03368
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: L-lysine 4-hydroxylase
    Species: Flavobacterium sp. (strain CF136) [TaxId:1144313]
    Gene: PMI10_03368
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: L-lysine 4-hydroxylase
    Species: Flavobacterium sp. (strain CF136) [TaxId:1144313]
    Gene: PMI10_03368
    Database cross-references and differences (RAF-indexed):
  • Heterogens: FE, MLT, GOL, SO4, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6euoA (A:)
mksqsimsversaetsltleiptspliikitqqernilsnvgnllvkafgnyenpdyias
lhlhafqllperitrilsqfgsdfsaeqygaivfqglievdqddlgptppnwqgadygkl
nkygficsllhgavpskpvqyyaqrkgggllhavipdekmaatqtgsgsktdlfvhteda
flsnqadflsflylrneervpstlysirshgkmnpvmkklfepiyqcpkdanyndedvan
sgptasvlygnrelpfirfdaaeqifnenagqtsealgnlmdfwdeaktlinsdyipnsg
dlifvnnhlcahgrsafiagqriengeiikcerrqmlrmmsktslihirsvtrtddpyfi
meehlgkifdld

    Sequence, based on observed residues (ATOM records):
    >6euoA (A:)
ltleiptspliikitqqernilsnvgnllvkafgnyenpdyiaslhlhafqllperitri
lsqfgsdfsaeqygaivfqglievdqddlgptppnwqgadygklnkygficsllhgavps
kpvqyyaqrkgggllhavipdekmaatqtgsgsktdlfvhtedaflsnqadflsflylrn
eervpstlysirshgkmnpvmkklfepiyqcpkdsgptasvlygnrelpfirfdaaeqif
nenagqtsealgnlmdfwdeaktlinsdyipnsgdlifvnnhlcahgrsafiagqrieng
eiikcerrqmlrmmsktslihirsvtrtddpyfimeehlgkifdld

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6euoB (B:)
mksqsimsversaetsltleiptspliikitqqernilsnvgnllvkafgnyenpdyias
lhlhafqllperitrilsqfgsdfsaeqygaivfqglievdqddlgptppnwqgadygkl
nkygficsllhgavpskpvqyyaqrkgggllhavipdekmaatqtgsgsktdlfvhteda
flsnqadflsflylrneervpstlysirshgkmnpvmkklfepiyqcpkdanyndedvan
sgptasvlygnrelpfirfdaaeqifnenagqtsealgnlmdfwdeaktlinsdyipnsg
dlifvnnhlcahgrsafiagqriengeiikcerrqmlrmmsktslihirsvtrtddpyfi
meehlgkifdld

    Sequence, based on observed residues (ATOM records):
    >6euoB (B:)
leiptspliikitqqernilsnvgnllvkafgnyenpdyiaslhlhafqllperitrils
qfgsdfsaeqygaivfqglievdqddlgptppnwqgadygklnkygficsllhgavpskp
vqyyaqrkgggllhavipdekmaatqtgsgsktdlfvhtedaflsnqadflsflylrnee
rvpstlysirshgkmnpvmkklfepiyqcpkdsgptasvlygnrelpfirfdaaeqifne
nagqtsealgnlmdfwdeaktlinsdyipnsgdlifvnnhlcahgrsafiagqcerrqml
rmmsktslihirsvtrtddpyfimeehlgkifdld

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6euoC (C:)
mksqsimsversaetsltleiptspliikitqqernilsnvgnllvkafgnyenpdyias
lhlhafqllperitrilsqfgsdfsaeqygaivfqglievdqddlgptppnwqgadygkl
nkygficsllhgavpskpvqyyaqrkgggllhavipdekmaatqtgsgsktdlfvhteda
flsnqadflsflylrneervpstlysirshgkmnpvmkklfepiyqcpkdanyndedvan
sgptasvlygnrelpfirfdaaeqifnenagqtsealgnlmdfwdeaktlinsdyipnsg
dlifvnnhlcahgrsafiagqriengeiikcerrqmlrmmsktslihirsvtrtddpyfi
meehlgkifdld

    Sequence, based on observed residues (ATOM records):
    >6euoC (C:)
aetsltleiptspliikitqqernilsnvgnllvkafgnyenpdyiaslhlhafqllper
itrilsqfgsdfsaeqygaivfqglievdqddlgptppnwqgadygklnkygficsllhg
avpskpvqyyaqrkgggllhavipdekmaatqtgsgsktdlfvhtedaflsnqadflsfl
ylrneervpstlysirshgkmnpvmkklfepiyqcpkdanvansgptasvlygnrelpfi
rfdaaeqifnenagqtsealgnlmdfwdeaktlinsdyipnsgdlifvnnhlcahgrsaf
iagqriengeiikcerrqmlrmmsktslihirsvtrtddpyfimeehlgkifdl

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6euoD (D:)
mksqsimsversaetsltleiptspliikitqqernilsnvgnllvkafgnyenpdyias
lhlhafqllperitrilsqfgsdfsaeqygaivfqglievdqddlgptppnwqgadygkl
nkygficsllhgavpskpvqyyaqrkgggllhavipdekmaatqtgsgsktdlfvhteda
flsnqadflsflylrneervpstlysirshgkmnpvmkklfepiyqcpkdanyndedvan
sgptasvlygnrelpfirfdaaeqifnenagqtsealgnlmdfwdeaktlinsdyipnsg
dlifvnnhlcahgrsafiagqriengeiikcerrqmlrmmsktslihirsvtrtddpyfi
meehlgkifdld

    Sequence, based on observed residues (ATOM records):
    >6euoD (D:)
tleiptspliikitqqernilsnvgnllvkafgnyenpdyiaslhlhafqllperitril
sqfgsdfsaeqygaivfqglievdqddlgptppnwqgadygklnkygficsllhgavpsk
pvqyyaqrkgggllhavipdekmaatqtgsgsktdlfvhtedaflsnqadflsflylrne
ervpstlysirshgkmnpvmkklfepiyqcpkdgptasvlygnrelpfirfdaaeqifne
nagqtsealgnlmdfwdeaktlinsdyipnsgdlifvnnhlcahgrsafiagqriengei
ikcerrqmlrmmsktslihirsvtrtddpyfimeehlgkifdld