PDB entry 6etg
View 6etg on RCSB PDB site
Description: Crystal structure of KDM4D with tetrazolhydrazide compound 6
Class: gene regulation
Keywords: KDM4D, ligand binding, Tetrazolylhydrazide, tetrazole, inhibitor design, cancer, epigenetics, GENE REGULATION
Deposited on
2017-10-26, released
2019-02-20
The last revision prior to the SCOPe 2.08 freeze date was dated
2020-03-11, with a file datestamp of
2020-03-06.
Experiment type: XRAY
Resolution: 1.28 Å
R-factor: N/A
AEROSPACI score: 0.6
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Lysine-specific demethylase 4D
Species: Homo sapiens [TaxId:9606]
Gene: KDM4D, JHDM3D, JMJD2D
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d6etga_ - Heterogens: ZN, NI, EDO, SO4, BWT, NA, CL, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>6etgA (A:)
metmkskancaqnpncnimifhptkeefndfdkyiaymesqgahraglakiippkewkar
etydniseiliatplqqvasgragvftqyhkkkkamtvgeyrhlanskkyqtpphqnfed
lerkywknriynspiygadisgslfdentkqwnlghlgtiqdllekecgvviegvntpyl
yfgmwkttfawhtedmdlysinylhlgepktwyvvppehgqrlerlarelfpgssrgcga
flrhkvalisptvlkengipfnritqeagefmvtfpygyhagfnhgfncaeainfatprw
idygkmasqcscgearvtfsmdafvrilqperydlwkrgqdr
Sequence, based on observed residues (ATOM records): (download)
>6etgA (A:)
aqnpncnimifhptkeefndfdkyiaymesqgahraglakiippkewkaretydniseil
iatplqqvasgragvftqyhkkkkamtvgeyrhlanskkyqtpphqnfedlerkywknri
ynspiygadisgslfdentkqwnlghlgtiqdllekecgvviegvntpylyfgmwkttfa
whtedmdlysinylhlgepktwyvvppehgqrlerlarelfpgssrgcgaflrhkvalis
ptvlkengipfnritqeagefmvtfpygyhagfnhgfncaeainfatprwidygkmasqc
scgearvtfsmdafvrilqperydlwkrgqd