PDB entry 6er3

View 6er3 on RCSB PDB site
Description: ruminococcus gnavus it-sialidase cbm40 bound to alpha2,3 sialyllactose
Deposited on 2017-10-16, released 2018-05-02
The last revision was dated 2020-07-29, with a file datestamp of 2020-06-29.
Experiment type: XRAY
Resolution: 1.37 Å
R-factor: N/A
AEROSPACI score: 0.62 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: BNR/Asp-box repeat protein
    Species: Ruminococcus gnavus ATCC 29149 [TaxId:411470]
    Gene: RUMGNA_02694
    Database cross-references and differences (RAF-indexed):
    • Uniprot A7B557 (2-End)
      • expression tag (0-1)
  • Chain 'B':
    Compound: BNR/Asp-box repeat protein
    Species: Ruminococcus gnavus ATCC 29149 [TaxId:411470]
    Gene: RUMGNA_02694
    Database cross-references and differences (RAF-indexed):
    • Uniprot A7B557 (2-189)
      • expression tag (0-1)
      • conflict (189)
  • Heterogens: SIA, GAL, GOL, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6er3A (A:)
gsvlqkegieisegtgydlskepgaatvkaleqgtivisykttsenaiqsllsvgngtkg
nqdrhfhlyitnaggvgmelrntdgefkytldcpaavrgsykgervsntvalkadkenkq
yklfangeliatldqeafkfisditgvdnvmlggtmrqgtvaypfggsiermqvyrdvls
ddeliavtgi

    Sequence, based on observed residues (ATOM records):
    >6er3A (A:)
gsvlqkegieisegtgydlskepgaatvkaleqgtivisykttsenaiqsllsvgngtkg
nqdrhfhlyitnaggvgmelrntdgefkytldcpaavrgsvsntvalkadkenkqyklfa
ngeliatldqeafkfisditgvdnvmlggtmrqgtvaypfggsiermqvyrdvlsddeli
avtg

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6er3B (B:)
gsvlqkegieisegtgydlskepgaatvkaleqgtivisykttsenaiqsllsvgngtkg
nqdrhfhlyitnaggvgmelrntdgefkytldcpaavrgsykgervsntvalkadkenkq
yklfangeliatldqeafkfisditgvdnvmlggtmrqgtvaypfggsiermqvyrdvls
ddeliavtgi

    Sequence, based on observed residues (ATOM records):
    >6er3B (B:)
gsvlqkegieisegtgydlskepgaatvkaleqgtivisykttsenaiqsllsvgngtkg
nqdrhfhlyitnaggvgmelrntdgefkytldcpaavrgrvsntvalkadkenkqyklfa
ngeliatldqeafkfisditgvdnvmlggtmrqgtvaypfggsiermqvyrdvlsddeli
avtgi