PDB entry 6eqi

View 6eqi on RCSB PDB site
Description: Structure of PINK1 bound to ubiquitin
Class: transferase
Keywords: PINK1 Ubiquitin Mitophagy Nanobody Substrate recognition Complex Parkinson's disease, TRANSFERASE
Deposited on 2017-10-13, released 2017-11-08
The last revision prior to the SCOPe 2.08 freeze date was dated 2018-01-31, with a file datestamp of 2018-01-26.
Experiment type: XRAY
Resolution: 3.1 Å
R-factor: N/A
AEROSPACI score: 0.13 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Ubiquitin
    Species: Homo sapiens [TaxId:9606]
    Gene: UBC
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0CG48 (0-End)
      • engineered mutation (65-66)
    Domains in SCOPe 2.08: d6eqia_
  • Chain 'B':
    Compound: Nb696
    Species: LAMA GLAMA [TaxId:9844]
    Database cross-references and differences (RAF-indexed):
    • PDB 6EQI (0-End)
    Domains in SCOPe 2.08: d6eqib1, d6eqib2
  • Chain 'C':
    Compound: Serine/threonine-protein kinase PINK1, putative
    Species: Pediculus humanus corporis [TaxId:121224]
    Gene: 8239562, Phum_PHUM577390
    Database cross-references and differences (RAF-indexed):
  • Heterogens: GOL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6eqiA (A:)
mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
iqkesvnhlvlrlrgg

    Sequence, based on observed residues (ATOM records): (download) 
    >6eqiA (A:)
mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
iqkesvnhlvlrl

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >6eqiB (B:)
qvqlvesggglvqaggslklscttsgrpfstfdlawfrqapgkerefvsglrrggstfya
dsvsgrftisggstkntlylqmnslkpedtaiyycarsitgyglvdsashytiwgqgtqv
tvsshhhhhhepea

    Sequence, based on observed residues (ATOM records): (download) 
    >6eqiB (B:)
qvqlvesggglvqaggslklscttsgrpfstfdlawfrqapgkerefvsglrrggstfya
dsvsgrftisgtkntlylqmnslkpedtaiyycarsitgyglvdsashytiwgqgtqvtv
sshh

  • Chain 'C':
    No sequence available.