PDB entry 6eqc

View 6eqc on RCSB PDB site
Description: cryo-em reconstruction of a complex of a binding protein and human adenovirus c5 hexon
Deposited on 2017-10-12, released 2018-02-07
The last revision was dated 2018-02-14, with a file datestamp of 2018-02-09.
Experiment type: EM
Resolution: 7.4 Å
R-factor: N/A
AEROSPACI score: -0.07 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: hexon protein
    Species: Human adenovirus 5 [TaxId:28285]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P04133
      • conflict (272)
      • conflict (420)
      • conflict (422-423)
      • conflict (425)
  • Chain 'B':
    Compound: hexon protein
    Species: Human adenovirus 5 [TaxId:28285]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P04133
      • conflict (272)
      • conflict (420)
      • conflict (422-423)
      • conflict (425)
  • Chain 'C':
    Compound: hexon protein
    Species: Human adenovirus 5 [TaxId:28285]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P04133
      • conflict (272)
      • conflict (420)
      • conflict (422-423)
      • conflict (425)
  • Chain 'D':
    Compound: scFv of 9C12 antibody
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 6EQC (0-End)
  • Chain 'E':
    Compound: scFv of 9C12 antibody
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 6EQC (0-End)
  • Chain 'F':
    Compound: scFv of 9C12 antibody
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 6EQC (0-End)

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6eqcA (A:)
matpsmmpqwsymhisgqdaseylspglvqfaratetyfslnnkfrnptvapthdvttdr
sqrltlrfipvdredtaysykarftlavgdnrvldmastyfdirgvldrgptfkpysgta
ynalapkgapnpcewdeaataleinleeedddnedevdeqaeqqkthvfgqapysginit
kegiqigvegqtpkyadktfqpepqigesqwyeteinhaagrvlkkttpmkpcygsyakp
tnenggqgilvkqqngklesqvemqffstteaaagngdnltpkvvlysedvdietpdthi
symptikegnsrelmgqqsmpnrpnyiafrdnfiglmyynstgnmgvlagqasqlnavvd
lqdrntelsyqllldsigdrtryfsmwnqavdsydpdvriienhgtedelpnycfplggv
gnnstytkvkpktgqengwekdatefsdkneirvgnnfameinlnanlwrnflysnialy
lpdklkyspsnvkisdnpntydymnkrvvapglvdcyinlgarwsldymdnvnpfnhhrn
aglryrsmllgngryvpfhiqvpqkffaiknllllpgsytyewnfrkdvnmvlqsslgnd
lrvdgasikfdsiclyatffpmahntastleamlrndtndqsfndylsaanmlypipana
tnvpisipsrnwaafrgwaftrlktketpslgsgydpyytysgsipyldgtfylnhtfkk
vaitfdssvswpgndrlltpnefeikrsvdgegynvaqcnmtkdwflvqmlanynigyqg
fyipesykdrmysffrnfqpmsrqvvddtkykdyqqvgilhqhnnsgfvgylaptmregq
aypanfpypligktavdsitqkkflcdrtlwripfssnfmsmgaltdlgqnllyansaha
ldmtfevdpmdeptllyvlfevfdvvrvhrphrgvietvylrtpfsagnatt

    Sequence, based on observed residues (ATOM records):
    >6eqcA (A:)
mpqwsymhisgqdaseylspglvqfaratetyfslnnkfrnptvapthdvttdrsqrltl
rfipvdredtaysykarftlavgdnrvldmastyfdirgvldrgptfkpysgtaynalap
kgapnpcewdeaataeqqkthvfgqapysginitkegiqigvegqtpkyadktfqpepqi
gesqwyeteinhaagrvlkkttpmkpcygsyakptnenggqgilvkqqngklesqvemqf
fstteaaagngdnltpkvvlysedvdietpdthisymptikegnsrelmgqqsmpnrpny
iafrdnfiglmyynstgnmgvlagqasqlnavvdlqdrntelsyqllldsigdrtryfsm
wnqavdsydpdvriienhgtedelpnycfplggvgnnstytkvkpktgqengwekdatef
sdkneirvgnnfameinlnanlwrnflysnialylpdklkyspsnvkisdnpntydymnk
rvvapglvdcyinlgarwsldymdnvnpfnhhrnaglryrsmllgngryvpfhiqvpqkf
faiknllllpgsytyewnfrkdvnmvlqsslgndlrvdgasikfdsiclyatffpmahnt
astleamlrndtndqsfndylsaanmlypipanatnvpisipsrnwaafrgwaftrlktk
etpslgsgydpyytysgsipyldgtfylnhtfkkvaitfdssvswpgndrlltpnefeik
rsvdgegynvaqcnmtkdwflvqmlanynigyqgfyipesykdrmysffrnfqpmsrqvv
ddtkykdyqqvgilhqhnnsgfvgylaptmregqaypanfpypligktavdsitqkkflc
drtlwripfssnfmsmgaltdlgqnllyansahaldmtfevdpmdeptllyvlfevfdvv
rvhrphrgvietvylrtpfsa

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6eqcB (B:)
matpsmmpqwsymhisgqdaseylspglvqfaratetyfslnnkfrnptvapthdvttdr
sqrltlrfipvdredtaysykarftlavgdnrvldmastyfdirgvldrgptfkpysgta
ynalapkgapnpcewdeaataleinleeedddnedevdeqaeqqkthvfgqapysginit
kegiqigvegqtpkyadktfqpepqigesqwyeteinhaagrvlkkttpmkpcygsyakp
tnenggqgilvkqqngklesqvemqffstteaaagngdnltpkvvlysedvdietpdthi
symptikegnsrelmgqqsmpnrpnyiafrdnfiglmyynstgnmgvlagqasqlnavvd
lqdrntelsyqllldsigdrtryfsmwnqavdsydpdvriienhgtedelpnycfplggv
gnnstytkvkpktgqengwekdatefsdkneirvgnnfameinlnanlwrnflysnialy
lpdklkyspsnvkisdnpntydymnkrvvapglvdcyinlgarwsldymdnvnpfnhhrn
aglryrsmllgngryvpfhiqvpqkffaiknllllpgsytyewnfrkdvnmvlqsslgnd
lrvdgasikfdsiclyatffpmahntastleamlrndtndqsfndylsaanmlypipana
tnvpisipsrnwaafrgwaftrlktketpslgsgydpyytysgsipyldgtfylnhtfkk
vaitfdssvswpgndrlltpnefeikrsvdgegynvaqcnmtkdwflvqmlanynigyqg
fyipesykdrmysffrnfqpmsrqvvddtkykdyqqvgilhqhnnsgfvgylaptmregq
aypanfpypligktavdsitqkkflcdrtlwripfssnfmsmgaltdlgqnllyansaha
ldmtfevdpmdeptllyvlfevfdvvrvhrphrgvietvylrtpfsagnatt

    Sequence, based on observed residues (ATOM records):
    >6eqcB (B:)
mpqwsymhisgqdaseylspglvqfaratetyfslnnkfrnptvapthdvttdrsqrltl
rfipvdredtaysykarftlavgdnrvldmastyfdirgvldrgptfkpysgtaynalap
kgapnpcewdeaataeqqkthvfgqapysginitkegiqigvegqtpkyadktfqpepqi
gesqwyeteinhaagrvlkkttpmkpcygsyakptnenggqgilvkqqngklesqvemqf
fstteaaagngdnltpkvvlysedvdietpdthisymptikegnsrelmgqqsmpnrpny
iafrdnfiglmyynstgnmgvlagqasqlnavvdlqdrntelsyqllldsigdrtryfsm
wnqavdsydpdvriienhgtedelpnycfplggvgnnstytkvkpktgqengwekdatef
sdkneirvgnnfameinlnanlwrnflysnialylpdklkyspsnvkisdnpntydymnk
rvvapglvdcyinlgarwsldymdnvnpfnhhrnaglryrsmllgngryvpfhiqvpqkf
faiknllllpgsytyewnfrkdvnmvlqsslgndlrvdgasikfdsiclyatffpmahnt
astleamlrndtndqsfndylsaanmlypipanatnvpisipsrnwaafrgwaftrlktk
etpslgsgydpyytysgsipyldgtfylnhtfkkvaitfdssvswpgndrlltpnefeik
rsvdgegynvaqcnmtkdwflvqmlanynigyqgfyipesykdrmysffrnfqpmsrqvv
ddtkykdyqqvgilhqhnnsgfvgylaptmregqaypanfpypligktavdsitqkkflc
drtlwripfssnfmsmgaltdlgqnllyansahaldmtfevdpmdeptllyvlfevfdvv
rvhrphrgvietvylrtpfsa

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6eqcC (C:)
matpsmmpqwsymhisgqdaseylspglvqfaratetyfslnnkfrnptvapthdvttdr
sqrltlrfipvdredtaysykarftlavgdnrvldmastyfdirgvldrgptfkpysgta
ynalapkgapnpcewdeaataleinleeedddnedevdeqaeqqkthvfgqapysginit
kegiqigvegqtpkyadktfqpepqigesqwyeteinhaagrvlkkttpmkpcygsyakp
tnenggqgilvkqqngklesqvemqffstteaaagngdnltpkvvlysedvdietpdthi
symptikegnsrelmgqqsmpnrpnyiafrdnfiglmyynstgnmgvlagqasqlnavvd
lqdrntelsyqllldsigdrtryfsmwnqavdsydpdvriienhgtedelpnycfplggv
gnnstytkvkpktgqengwekdatefsdkneirvgnnfameinlnanlwrnflysnialy
lpdklkyspsnvkisdnpntydymnkrvvapglvdcyinlgarwsldymdnvnpfnhhrn
aglryrsmllgngryvpfhiqvpqkffaiknllllpgsytyewnfrkdvnmvlqsslgnd
lrvdgasikfdsiclyatffpmahntastleamlrndtndqsfndylsaanmlypipana
tnvpisipsrnwaafrgwaftrlktketpslgsgydpyytysgsipyldgtfylnhtfkk
vaitfdssvswpgndrlltpnefeikrsvdgegynvaqcnmtkdwflvqmlanynigyqg
fyipesykdrmysffrnfqpmsrqvvddtkykdyqqvgilhqhnnsgfvgylaptmregq
aypanfpypligktavdsitqkkflcdrtlwripfssnfmsmgaltdlgqnllyansaha
ldmtfevdpmdeptllyvlfevfdvvrvhrphrgvietvylrtpfsagnatt

    Sequence, based on observed residues (ATOM records):
    >6eqcC (C:)
mpqwsymhisgqdaseylspglvqfaratetyfslnnkfrnptvapthdvttdrsqrltl
rfipvdredtaysykarftlavgdnrvldmastyfdirgvldrgptfkpysgtaynalap
kgapnpcewdeaataeqqkthvfgqapysginitkegiqigvegqtpkyadktfqpepqi
gesqwyeteinhaagrvlkkttpmkpcygsyakptnenggqgilvkqqngklesqvemqf
fstteaaagngdnltpkvvlysedvdietpdthisymptikegnsrelmgqqsmpnrpny
iafrdnfiglmyynstgnmgvlagqasqlnavvdlqdrntelsyqllldsigdrtryfsm
wnqavdsydpdvriienhgtedelpnycfplggvgnnstytkvkpktgqengwekdatef
sdkneirvgnnfameinlnanlwrnflysnialylpdklkyspsnvkisdnpntydymnk
rvvapglvdcyinlgarwsldymdnvnpfnhhrnaglryrsmllgngryvpfhiqvpqkf
faiknllllpgsytyewnfrkdvnmvlqsslgndlrvdgasikfdsiclyatffpmahnt
astleamlrndtndqsfndylsaanmlypipanatnvpisipsrnwaafrgwaftrlktk
etpslgsgydpyytysgsipyldgtfylnhtfkkvaitfdssvswpgndrlltpnefeik
rsvdgegynvaqcnmtkdwflvqmlanynigyqgfyipesykdrmysffrnfqpmsrqvv
ddtkykdyqqvgilhqhnnsgfvgylaptmregqaypanfpypligktavdsitqkkflc
drtlwripfssnfmsmgaltdlgqnllyansahaldmtfevdpmdeptllyvlfevfdvv
rvhrphrgvietvylrtpfsa

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6eqcD (D:)
dykddddkdivmtqspsslsasvgdrvtitckasqsvtndaawyqkkpgkapklliyqas
trytgvpsrfsgsgygtdftltisslqpedfatyfchqdysspltfgqgtkveikrgggg
sggggsggggsqvqlvqsgaedkkpgasvkvsckvsgfslgrygvhwvrqapgqglewmg
viwrggttdynakfqgrvtitkddskstvymelsslrsedtavyycarqgsnfplaywgq
gtlvtvsslevlfq

    Sequence, based on observed residues (ATOM records):
    >6eqcD (D:)
dykddddkdivmtqspsslsasvgdrvtitckasqsvtndaawyqkkpgkapklliyqas
trytgvpsrfsgsgygtdftltisslqpedfatyfchqdysspltfgqgtkveikrqvql
vqsgaedkkpgasvkvsckvsgfslgrygvhwvrqapgqglewmgviwrggttdynakfq
grvtitkddskstvymelsslrsedtavyycarqgsnfplaywgqgtlvtvss

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6eqcE (E:)
dykddddkdivmtqspsslsasvgdrvtitckasqsvtndaawyqkkpgkapklliyqas
trytgvpsrfsgsgygtdftltisslqpedfatyfchqdysspltfgqgtkveikrgggg
sggggsggggsqvqlvqsgaedkkpgasvkvsckvsgfslgrygvhwvrqapgqglewmg
viwrggttdynakfqgrvtitkddskstvymelsslrsedtavyycarqgsnfplaywgq
gtlvtvsslevlfq

    Sequence, based on observed residues (ATOM records):
    >6eqcE (E:)
dykddddkdivmtqspsslsasvgdrvtitckasqsvtndaawyqkkpgkapklliyqas
trytgvpsrfsgsgygtdftltisslqpedfatyfchqdysspltfgqgtkveikrqvql
vqsgaedkkpgasvkvsckvsgfslgrygvhwvrqapgqglewmgviwrggttdynakfq
grvtitkddskstvymelsslrsedtavyycarqgsnfplaywgqgtlvtvss

  • Chain 'F':
    Sequence, based on SEQRES records:
    >6eqcF (F:)
dykddddkdivmtqspsslsasvgdrvtitckasqsvtndaawyqkkpgkapklliyqas
trytgvpsrfsgsgygtdftltisslqpedfatyfchqdysspltfgqgtkveikrgggg
sggggsggggsqvqlvqsgaedkkpgasvkvsckvsgfslgrygvhwvrqapgqglewmg
viwrggttdynakfqgrvtitkddskstvymelsslrsedtavyycarqgsnfplaywgq
gtlvtvsslevlfq

    Sequence, based on observed residues (ATOM records):
    >6eqcF (F:)
dykddddkdivmtqspsslsasvgdrvtitckasqsvtndaawyqkkpgkapklliyqas
trytgvpsrfsgsgygtdftltisslqpedfatyfchqdysspltfgqgtkveikrqvql
vqsgaedkkpgasvkvsckvsgfslgrygvhwvrqapgqglewmgviwrggttdynakfq
grvtitkddskstvymelsslrsedtavyycarqgsnfplaywgqgtlvtvss