PDB entry 6epi

View 6epi on RCSB PDB site
Description: structure of the epsilon_1 / zeta_1 antitoxin / toxin system from neisseria gonorrhoeae in complex with unam-4p.
Deposited on 2017-10-11, released 2018-05-02
The last revision was dated 2019-10-16, with a file datestamp of 2019-10-11.
Experiment type: XRAY
Resolution: 2.8 Å
R-factor: N/A
AEROSPACI score: 0.18 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Epsilon_1 antitoxin
    Species: NEISSERIA GONORRHOEAE [TaxId:485]
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Zeta_1 toxin
    Species: NEISSERIA GONORRHOEAE [TaxId:485]
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Epsilon_1 antitoxin
    Species: NEISSERIA GONORRHOEAE [TaxId:485]
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Zeta_1 toxin
    Species: NEISSERIA GONORRHOEAE [TaxId:485]
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: Epsilon_1 antitoxin
    Species: NEISSERIA GONORRHOEAE [TaxId:485]
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: Zeta_1 toxin
    Species: NEISSERIA GONORRHOEAE [TaxId:485]
    Database cross-references and differences (RAF-indexed):
  • Chain 'G':
    Compound: Epsilon_1 antitoxin
    Species: NEISSERIA GONORRHOEAE [TaxId:485]
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: Zeta_1 toxin
    Species: NEISSERIA GONORRHOEAE [TaxId:485]
    Database cross-references and differences (RAF-indexed):
  • Heterogens: BNW, SO4, FLC, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6epiA (A:)
mnkvepqesnairmikeaceknrrmmtdeafrkevekrlyagpspellaklrvlwaanke
q

    Sequence, based on observed residues (ATOM records):
    >6epiA (A:)
esnairmikeaceknrrmmtdeafrkevekrlyagpspellaklrvlwaank

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6epiB (B:)
mvklssdinlrdfgnneylssvqdeairfateqtdeilslysqhadteggryvcadtfke
lfpafenkedratvnnaihnsaavlsstqfdevlkrdepqkkevifvtgipgsgktstvk
nmmmqdttkllfegqlarpqsafrkieqclernlevtivavsmraerasdntykrfneyg
rgasigimadiqanlpdglkqirdkfgdavkivginqdrnsefidkfddvikmlslgsqe
qilgrlaekiqsdfdsgkisrecfnqakgsmdlesvfakkeysqqrvvtnskgvtletks
anelwskveqipvtgmkagiyllgqakkaetgqtysgeiiykdaaavfqktknglvrhna
thneerlaklveigqnvsigsnkgklivksleysakksisr

    Sequence, based on observed residues (ATOM records):
    >6epiB (B:)
vklssdinlrdfgnneylssvqdeairfateqtdeilslysqhadteggryvcadtfkel
fpafenkedratvnnaihnsaavlsstqfdevlkrdepqkkevifvtgipgsgktstvkn
mmmqdttkllfegqlarpqsafrkieqclernlevtivavsmraerasdntykrfneygr
gasigimadiqanlpdglkqirdkfgdavkivginqdrnsefidkfddvikmlslgsqeq
ilgrlaekiqsdfdsgkisrecfnqakgsmdlesvfakkeysqqrvvtnskgvtletksa
nelwskveqipvtgmkagiyllgqakkaetgqtysgeiiykdaaavfqktknglvrhnat
hneerlaklveigqnvsigsnkgklivksleysa

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6epiC (C:)
mnkvepqesnairmikeaceknrrmmtdeafrkevekrlyagpspellaklrvlwaanke
q

    Sequence, based on observed residues (ATOM records):
    >6epiC (C:)
qesnairmikeaceknrrmmtdeafrkevekrlyagpspellaklrvlwaanke

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6epiD (D:)
mvklssdinlrdfgnneylssvqdeairfateqtdeilslysqhadteggryvcadtfke
lfpafenkedratvnnaihnsaavlsstqfdevlkrdepqkkevifvtgipgsgktstvk
nmmmqdttkllfegqlarpqsafrkieqclernlevtivavsmraerasdntykrfneyg
rgasigimadiqanlpdglkqirdkfgdavkivginqdrnsefidkfddvikmlslgsqe
qilgrlaekiqsdfdsgkisrecfnqakgsmdlesvfakkeysqqrvvtnskgvtletks
anelwskveqipvtgmkagiyllgqakkaetgqtysgeiiykdaaavfqktknglvrhna
thneerlaklveigqnvsigsnkgklivksleysakksisr

    Sequence, based on observed residues (ATOM records):
    >6epiD (D:)
vklssdinlrdfgnneylssvqdeairfateqtdeilslysqhadteggryvcadtfkel
fpafenkedratvnnaihnsaavlsstqfdevlkrdepqkkevifvtgipgsgktstvkn
mmmqdttkllfegqlarpqsafrkieqclernlevtivavsmraerasdntykrfneygr
gasigimadiqanlpdglkqirdkfgdavkivginqdrnsefidkfddvikmlslgsqeq
ilgrlaekiqsdfdsgkisrecfnqakgsmdlesvfakkeysqqrvvtnskgvtletksa
nelwskveqipvtgmkagiyllgqakkaetgqtysgeiiykdaaavfqktknglvrhnat
hneerlaklveigqnvsigsnkgklivksleysa

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6epiE (E:)
mnkvepqesnairmikeaceknrrmmtdeafrkevekrlyagpspellaklrvlwaanke
q

    Sequence, based on observed residues (ATOM records):
    >6epiE (E:)
esnairmikeaceknrrmmtdeafrkevekrlyagpspellaklrvlwaank

  • Chain 'F':
    Sequence, based on SEQRES records:
    >6epiF (F:)
mvklssdinlrdfgnneylssvqdeairfateqtdeilslysqhadteggryvcadtfke
lfpafenkedratvnnaihnsaavlsstqfdevlkrdepqkkevifvtgipgsgktstvk
nmmmqdttkllfegqlarpqsafrkieqclernlevtivavsmraerasdntykrfneyg
rgasigimadiqanlpdglkqirdkfgdavkivginqdrnsefidkfddvikmlslgsqe
qilgrlaekiqsdfdsgkisrecfnqakgsmdlesvfakkeysqqrvvtnskgvtletks
anelwskveqipvtgmkagiyllgqakkaetgqtysgeiiykdaaavfqktknglvrhna
thneerlaklveigqnvsigsnkgklivksleysakksisr

    Sequence, based on observed residues (ATOM records):
    >6epiF (F:)
mvklssdinlrdfgnneylssvqdeairfateqtdeilslysqhadteggryvcadtfke
lfpafenkedratvnnaihnsaavlsstqfdevlkrdepqkkevifvtgipgsgktstvk
nmmmqdttkllfegqlarpqsafrkieqclernlevtivavsmraerasdntykrfneyg
rgasigimadiqanlpdglkqirdkfgdavkivginqdrnsefidkfddvikmlslgsqe
qilgrlaekiqsdfdsgkisrecfnqakgsmdlesvfakkeysqqrvvtnskgvtletks
anelwskveqipvtgmkagiyllgqakkaetgqtysgeiiykdaaavfqktknglvrhna
thneerlaklveigqnvsigsnkgklivksleysa

  • Chain 'G':
    Sequence, based on SEQRES records:
    >6epiG (G:)
mnkvepqesnairmikeaceknrrmmtdeafrkevekrlyagpspellaklrvlwaanke
q

    Sequence, based on observed residues (ATOM records):
    >6epiG (G:)
qesnairmikeaceknrrmmtdeafrkevekrlyagpspellaklrvlwaank

  • Chain 'H':
    Sequence, based on SEQRES records:
    >6epiH (H:)
mvklssdinlrdfgnneylssvqdeairfateqtdeilslysqhadteggryvcadtfke
lfpafenkedratvnnaihnsaavlsstqfdevlkrdepqkkevifvtgipgsgktstvk
nmmmqdttkllfegqlarpqsafrkieqclernlevtivavsmraerasdntykrfneyg
rgasigimadiqanlpdglkqirdkfgdavkivginqdrnsefidkfddvikmlslgsqe
qilgrlaekiqsdfdsgkisrecfnqakgsmdlesvfakkeysqqrvvtnskgvtletks
anelwskveqipvtgmkagiyllgqakkaetgqtysgeiiykdaaavfqktknglvrhna
thneerlaklveigqnvsigsnkgklivksleysakksisr

    Sequence, based on observed residues (ATOM records):
    >6epiH (H:)
mvklssdinlrdfgnneylssvqdeairfateqtdeilslysqhadteggryvcadtfke
lfpafenkedratvnnaihnsaavlsstqfdevlkrdepqkkevifvtgipgsgktstvk
nmmmqdttkllfegqlarpqsafrkieqclernlevtivavsmraerasdntykrfneyg
rgasigimadiqanlpdglkqirdkfgdavkivginqdrnsefidkfddvikmlslgsqe
qilgrlaekiqsdfdsgkisrecfnqakgsmdlesvfakkeysqqrvvtnskgvtletks
anelwskveqipvtgmkagiyllgqakkaetgqtysgeiiykdaaavfqktknglvrhna
thneerlaklveigqnvsigsnkgklivksleysa