PDB entry 6epg

View 6epg on RCSB PDB site
Description: structure of the epsilon_1 / zeta_1 antitoxin / toxin system from neisseria gonorrhoeae.
Deposited on 2017-10-11, released 2018-05-02
The last revision was dated 2018-05-09, with a file datestamp of 2018-05-04.
Experiment type: XRAY
Resolution: 2.4 Å
R-factor: N/A
AEROSPACI score: 0.23 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Epsilon_1 antitoxin
    Species: NEISSERIA GONORRHOEAE [TaxId:485]
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Zeta_1 toxin
    Species: NEISSERIA GONORRHOEAE [TaxId:485]
    Database cross-references and differences (RAF-indexed):
    • Uniprot D5K9G7 (1-End)
      • engineered mutation (114)
  • Chain 'C':
    Compound: Epsilon_1 antitoxin
    Species: NEISSERIA GONORRHOEAE [TaxId:485]
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Zeta_1 toxin
    Species: NEISSERIA GONORRHOEAE [TaxId:485]
    Database cross-references and differences (RAF-indexed):
    • Uniprot D5K9G7 (1-End)
      • engineered mutation (114)
  • Chain 'E':
    Compound: Epsilon_1 antitoxin
    Species: NEISSERIA GONORRHOEAE [TaxId:485]
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: Zeta_1 toxin
    Species: NEISSERIA GONORRHOEAE [TaxId:485]
    Database cross-references and differences (RAF-indexed):
    • Uniprot D5K9G7 (1-End)
      • initiating methionine (0)
      • engineered mutation (114)
  • Chain 'G':
    Compound: Epsilon_1 antitoxin
    Species: NEISSERIA GONORRHOEAE [TaxId:485]
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: Zeta_1 toxin
    Species: NEISSERIA GONORRHOEAE [TaxId:485]
    Database cross-references and differences (RAF-indexed):
    • Uniprot D5K9G7 (1-End)
      • initiating methionine (0)
      • engineered mutation (114)
  • Heterogens: SO4, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6epgA (A:)
mnkvepqesnairmikeaceknrrmmtdeafrkevekrlyagpspellaklrvlwaanke
q

    Sequence, based on observed residues (ATOM records):
    >6epgA (A:)
qesnairmikeaceknrrmmtdeafrkevekrlyagpspellaklrvlwaanke

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6epgB (B:)
mvklssdinlrdfgnneylssvqdeairfateqtdeilslysqhadteggryvcadtfke
lfpafenkedratvnnaihnsaavlsstqfdevlkrdepqkkevifvtgipgsgatstvk
nmmmqdttkllfegqlarpqsafrkieqclernlevtivavsmraerasdntykrfneyg
rgasigimadiqanlpdglkqirdkfgdavkivginqdrnsefidkfddvikmlslgsqe
qilgrlaekiqsdfdsgkisrecfnqakgsmdlesvfakkeysqqrvvtnskgvtletks
anelwskveqipvtgmkagiyllgqakkaetgqtysgeiiykdaaavfqktknglvrhna
thneerlaklveigqnvsigsnkgklivksleysakksisr

    Sequence, based on observed residues (ATOM records):
    >6epgB (B:)
vklssdinlrdfgnneylssvqdeairfateqtdeilslysqhadteggryvcadtfkel
fpafenkedratvnnaihnsaavlsstqfdevlkrdepqkkevifvtgipgsgatstvkn
mmmqdttkllfegqlarpqsafrkieqclernlevtivavsmraerasdntykrfneygr
gasigimadiqanlpdglkqirdkfgdavkivginqdrnsefidkfddvikmlslgsqeq
ilgrlaekiqsdfdsgkisrecfnqakgsmdlesvfakkeysqqrvvtnskgvtletksa
nelwskveqipvtgmkagiyllgqakkaetgqtysgeiiykdaaavfqktknglvrhnat
hneerlaklveigqnvsigslivksleysa

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6epgC (C:)
mnkvepqesnairmikeaceknrrmmtdeafrkevekrlyagpspellaklrvlwaanke
q

    Sequence, based on observed residues (ATOM records):
    >6epgC (C:)
epqesnairmikeaceknrrmmtdeafrkevekrlyagpspellaklrvlwaanke

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6epgD (D:)
mvklssdinlrdfgnneylssvqdeairfateqtdeilslysqhadteggryvcadtfke
lfpafenkedratvnnaihnsaavlsstqfdevlkrdepqkkevifvtgipgsgatstvk
nmmmqdttkllfegqlarpqsafrkieqclernlevtivavsmraerasdntykrfneyg
rgasigimadiqanlpdglkqirdkfgdavkivginqdrnsefidkfddvikmlslgsqe
qilgrlaekiqsdfdsgkisrecfnqakgsmdlesvfakkeysqqrvvtnskgvtletks
anelwskveqipvtgmkagiyllgqakkaetgqtysgeiiykdaaavfqktknglvrhna
thneerlaklveigqnvsigsnkgklivksleysakksisr

    Sequence, based on observed residues (ATOM records):
    >6epgD (D:)
vklssdinlrdfgnneylssvqdeairfateqtdeilslysqhadteggryvcadtfkel
fpafenkedratvnnaihnsaavlsstqfdevlkrdepqkkevifvtgipgsgatstvkn
mmmqdttkllfegqlarpqsafrkieqclernlevtivavsmraerasdntykrfneygr
gasigimadiqanlpdglkqirdkfgdavkivginqdrnsefidkfddvikmlslgsqeq
ilgrlaekiqsdfdsgkisrecfnqakgsmdlesvfakkeysqqrvvtnskgvtletksa
nelwskveqipvtgmkagiyllgqakkaetgqtysgeiiykdaaavfqktknglvrhnat
hneerlaklveigqnvsigsnkgklivksleysa

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6epgE (E:)
mnkvepqesnairmikeaceknrrmmtdeafrkevekrlyagpspellaklrvlwaanke
q

    Sequence, based on observed residues (ATOM records):
    >6epgE (E:)
qesnairmikeaceknrrmmtdeafrkevekrlyagpspellaklrvlwaanke

  • Chain 'F':
    Sequence, based on SEQRES records:
    >6epgF (F:)
mvklssdinlrdfgnneylssvqdeairfateqtdeilslysqhadteggryvcadtfke
lfpafenkedratvnnaihnsaavlsstqfdevlkrdepqkkevifvtgipgsgatstvk
nmmmqdttkllfegqlarpqsafrkieqclernlevtivavsmraerasdntykrfneyg
rgasigimadiqanlpdglkqirdkfgdavkivginqdrnsefidkfddvikmlslgsqe
qilgrlaekiqsdfdsgkisrecfnqakgsmdlesvfakkeysqqrvvtnskgvtletks
anelwskveqipvtgmkagiyllgqakkaetgqtysgeiiykdaaavfqktknglvrhna
thneerlaklveigqnvsigsnkgklivksleysakksisr

    Sequence, based on observed residues (ATOM records):
    >6epgF (F:)
mvklssdinlrdfgnneylssvqdeairfateqtdeilslysqhadteggryvcadtfke
lfpafenkedratvnnaihnsaavlsstqfdevlkrdepqkkevifvtgipgsgatstvk
nmmmqdttkllfegqlarpqsafrkieqclernlevtivavsmraerasdntykrfneyg
rgasigimadiqanlpdglkqirdkfgdavkivginqdrnsefidkfddvikmlslgsqe
qilgrlaekiqsdfdsgkisrecfnqakgsmdlesvfakkeysqqrvvtnskgvtletks
anelwskveqipvtgmkagiyllgqakkaetgqtysgeiiykdaaavfqktknglvrhna
thneerlaklveigqnvsigsnkgklivksleysa

  • Chain 'G':
    Sequence, based on SEQRES records:
    >6epgG (G:)
mnkvepqesnairmikeaceknrrmmtdeafrkevekrlyagpspellaklrvlwaanke
q

    Sequence, based on observed residues (ATOM records):
    >6epgG (G:)
qesnairmikeaceknrrmmtdeafrkevekrlyagpspellaklrvlwaanke

  • Chain 'H':
    Sequence, based on SEQRES records:
    >6epgH (H:)
mvklssdinlrdfgnneylssvqdeairfateqtdeilslysqhadteggryvcadtfke
lfpafenkedratvnnaihnsaavlsstqfdevlkrdepqkkevifvtgipgsgatstvk
nmmmqdttkllfegqlarpqsafrkieqclernlevtivavsmraerasdntykrfneyg
rgasigimadiqanlpdglkqirdkfgdavkivginqdrnsefidkfddvikmlslgsqe
qilgrlaekiqsdfdsgkisrecfnqakgsmdlesvfakkeysqqrvvtnskgvtletks
anelwskveqipvtgmkagiyllgqakkaetgqtysgeiiykdaaavfqktknglvrhna
thneerlaklveigqnvsigsnkgklivksleysakksisr

    Sequence, based on observed residues (ATOM records):
    >6epgH (H:)
mvklssdinlrdfgnneylssvqdeairfateqtdeilslysqhadteggryvcadtfke
lfpafenkedratvnnaihnsaavlsstqfdevlkrdepqkkevifvtgipgsgatstvk
nmmmqdttkllfegqlarpqsafrkieqclernlevtivavsmraerasdntykrfneyg
rgasigimadiqanlpdglkqirdkfgdavkivginqdrnsefidkfddvikmlslgsqe
qilgrlaekiqsdfdsgkisrecfnqakgsmdlesvfakkeysqqrvvtnskgvtletks
anelwskveqipvtgmkagiyllgqakkaetgqtysgeiiykdaaavfqktknglvrhna
thneerlaklveigqnvsigskgklivksleysak