PDB entry 6eoj

View 6eoj on RCSB PDB site
Description: polya polymerase module of the cleavage and polyadenylation factor (cpf) from saccharomyces cerevisiae
Deposited on 2017-10-09, released 2017-11-15
The last revision was dated 2018-01-31, with a file datestamp of 2018-01-26.
Experiment type: EM
Resolution: 3.55 Å
R-factor: N/A
AEROSPACI score: 0.07 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Protein CFT1
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
    Gene: CFT1, YHH1, YDR301W
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: mRNA 3'-end-processing protein YTH1
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
    Gene: YTH1, YPR107C
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q06102 (1-End)
      • expression tag (0)
  • Chain 'D':
    Compound: Polyadenylation factor subunit 2,Polyadenylation factor subunit 2
    Species: Saccharomyces cerevisiae S288c [TaxId:559292]
    Gene: PFS2, YNL317W, N0348
    Database cross-references and differences (RAF-indexed):
    • Uniprot P42841
    • PDB 6EOJ (465-469)
  • Heterogens: ZN

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6eojA (A:)
mnvyddvldatvvshslathfttsdyeellvvrtnilsvyrptrdgklyltdefkfhgli
tdiglipqkdsplsclllctgvakisilkfntltnsidtlslhyyegkfkgkslvelaki
stlrmdpgsscallfnndiiaflpfhvnkndddeeeededeniddselihsmnqksqgtn
tfnkrkrtklgdkftapsvvlvaselyegakniidiqflknftkptiallyqpklvwagn
ttisklptqyviltlniqpaesatkiesttiafvkelpwdlhtivpvsngaiivgtnela
fldntgvlqstvllnsfadkelqktkiinnssleimfreknttsiwipssksknggsnnd
etlllmdlksniyyiqmeaegrllikfdifklpivndllkensnpkcitrlnatnsnknm
dlfigfgsgnalvlrlnnlkstietreahnpssgtnslmdinddddeemddlyadeapen
glttndskgtvetvqpfdiellsslrnvgpitsltvgkvssiddvvkglpnpnkneyslv
atsgngsgshltviqtsvqpeielalkfisitqiwnlkikgrdrylittdstksrsdiye
sdnnfklhkggrlrrdattvyismfgeekriiqvttnhlylydthfrrlttikfdyevih
vsvmdpyilvtvsrgdikifeleeknkrkllkvdlpeilnemvitsglilksnmcnefli
glsksqeeqllftfvtadnqiifftkdhndrifqlngvdqlneslyistyqlgdeivpdp
sikqvminklghdnkeeyltiltfggeiyqyrklpqrrsrfyrnvtrndlaitgapdnay
akgvssierimhyfpdyngysvifvtgsvpyilikeddstpkifkfgniplvsvtpwser
svmcvddiknarvytlttdnmyygnklplkqikisnvlddyktlqklvyheraqlflvsy
ckrvpyealgedgekvigydenvphaegfqsgillinpkswkvidkidfpknsvvnemrs
smiqinsktkrkreyiiagvanattedtpptgafhiydvievvpepgkpdtnyklkeifq
eevsgtvstvcevsgrfmisqsqkvlvrdiqednsvipvafldipvfvtdsksfgnllii
gdamqgfqfigfdaepyrmislgrsmskfqtmsleflvnggdmyfaatdadrnvhvlkya
pdepnslsgqrlvhcssftlhstnscmmllprneefgspqvpsfqnvggqvdgsvfkivp
lseekyrrlyviqqqiidrelqlgglnprmerlandfyqmghsmrpmldfnvirrfcgla
idrrksiaqkagrhahfeawrdiiniefsmrslcqgk

    Sequence, based on observed residues (ATOM records):
    >6eojA (A:)
mnvyddvldatvvshslathfttsdyeellvvrtnilsvyrptrdgklyltdefkfhgli
tdiglipqkdsplsclllctgvakisilkfntltnsidtlslhyyegkfkgkslvelaki
stlrmdpgsscallfnndiiaflpfhvkftapsvvlvaselyegakniidiqflknftkp
tiallyqpklvwagnttisklptqyviltlniqpaesatkiesttiafvkelpwdlhtiv
pvsngaiivgtnelafldntgvlqstvllnsfadkkiinnssleimfreknttsiwipss
knndetlllmdlksniyyiqmeaellikfdifklpivndllkensnpkcitrlnatnsnk
nmdlfigfgsgnalvlrlnnlkspfdiellsslrnvgpitsltvgkvssiddvvkglpnp
nkneyslvatsgngsgshltviqtsvqpeielalkfisitqiwnlkikgrdrylittdst
ksrsdiyesdnnfklggrlrrdattvyismfgeekriiqvttnhlylydthfrrlttikf
dyevihvsvmdpyilvtvsrgdikifeleeknkrkllkvdlpeilnemvitsglilksnm
cnefliglsksqeeqllftfvtadnqiifftkdhndrifqlngvdqlneslyistyqlgd
eivpdpsikqvminklghdnkeeyltiltfggeiyqyrklpqrrsrfyrnvtrndlaitg
apdnayakgvssierimhyfpdyngysvifvtgsvpyilikeddstpkifkfgniplvsv
tpwsersvmcvddiknarvytlttdnmyygnklplkqikisnvlddyktlqklvyheraq
lflvsyckrvpyealgedgekvigydenvphaegfqsgillinpkswkvidkidfpknsv
vnemrssmiqinsktkrkreyiiagvanattedtpptgafhiydvievvpepgkpdtnyk
lkeifqeevsgtvstvcevsgrfmisqsqkvlvrdiqednsvipvafldipvfvtdsksf
gnlliigdamqgfqfigfdaepyrmislgrsmskfqtmsleflvnggdmyfaatdadrnv
hvlkyapdepnslsgqrlvhcssftlhstnscmmllprneefgspqvpsfqnvggqvdgs
vfkivplseekyrrlyviqqqiidrelqlgglnprmerlandsmrpmldfnvirrfcgla
idrrksiaqhahfeawrdiiniefsmrslcqgk

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6eojB (B:)
pslihpdtakypfkfepflrqeysfsldpdrpicefynsregpkscprgplcpkkhvlpi
fqnkivcrhwlrglckkndqceylheynlrkmpecvffskngyctqspdcqylhidpask
ipkcenyemgfcplgsscprrhikkvfcqrymtgfcplgkdecdmehpqfiipdegsklr
ikrddeintrkmdeekerrlnaiingev

    Sequence, based on observed residues (ATOM records):
    >6eojB (B:)
pslihpdtakypfkfepflrqeysfsldpdrpicefynsregpkscprgplcpkkhvlpi
fqnkivcrhwlrglckkndqceylheynlrkmpe

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6eojD (D:)
mdghnqnqyqnqnqiqqsqqpplkkyvtqrrsvdvsspyinlyynrrhglpnlvvepets
ytidimppnayrgrdrvinlpskfthlssnkvkhvipaiqwtpegrrlvvatysgefslw
nassftfetlmqahdsavttmkyshdsdwmisgdadgmikiwqpnfsmvkeidaahtesi
rdmafssndskfvtcsddnilkiwnfsngkqervlsghhwdvkscdwhpemgliasaskd
nlvklwdprsgncissilkfkhtvlktrfqptkgnllmaiskdkscrvfdirysmkelmc
vrdetdymtlewhpinesmftlacydgslkhfdllqnlnepiltipyahdkcitslsynp
vghifataakdrtirfwtrarpidpnayddptynnkkingwffginndinavreksefga
appppatlephalpnmngfinkkprqeipgidsniksstlpglsixxxxx

    Sequence, based on observed residues (ATOM records):
    >6eojD (D:)
vtqrrsvdvsspyinlyynrrhglpnlvvepetsytidimppnayrgrdrvinlpskfth
lssnkvkhvipaiqwtpegrrlvvatysgefslwnassftfetlmqahdsavttmkyshd
sdwmisgdadgmikiwqpnfsmvkeidaahtesirdmafssndskfvtcsddnilkiwnf
sngkqervlsghhwdvkscdwhpemgliasaskdnlvklwdprsgncissilkfkhtvlk
trfqptkgnllmaiskdkscrvfdirysmkelmcvrdetdymtlewhpinesmftlacyd
gslkhfdllqnlnepiltipyahdkcitslsynpvghifataakdrtirfwtrarpidpn
ayptynnkkingwffginndinaxxxxx