PDB entry 6emy

View 6emy on RCSB PDB site
Description: structure of the tn1549 transposon integrase (aa 82-397, y379f) in complex with transposon right end dna
Deposited on 2017-10-04, released 2018-04-04
The last revision was dated 2018-09-19, with a file datestamp of 2018-09-14.
Experiment type: XRAY
Resolution: 2.5 Å
R-factor: N/A
AEROSPACI score: 0.21 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Int protein
    Species: Enterococcus faecalis [TaxId:1351]
    Gene: INT
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q7BP35 (1-316)
      • engineered mutation (298)
  • Chain 'B':
    Compound: Int protein
    Species: Enterococcus faecalis [TaxId:1351]
    Gene: INT
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q7BP35 (1-316)
      • engineered mutation (298)
  • Chain 'C':
    Compound: DNA (20-mer)
    Species: Clostridioides difficile, synthetic [TaxId:1496]
  • Chain 'D':
    Compound: DNA (26-mer)
    Species: Clostridioides difficile, synthetic [TaxId:1496]
  • Chain 'E':
    Compound: DNA (20-mer)
    Species: Clostridioides difficile, synthetic [TaxId:1496]
  • Chain 'F':
    Compound: DNA (26-mer)
    Species: Clostridioides difficile, synthetic [TaxId:1496]
  • Heterogens: HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6emyA (A:)
smtvcqlyakqirhrgnvkhntklgrerlmrileqdrlgscpidsvklsdakewalrmke
kglsyktinndkrslkaafytaiqddcirknpfdfqlsdvldddtepkvpltpaqeesfl
sfiqgdkvyqkhydaivillgtglriselcgltdkdldfenrviivshqllrntgvgyyi
depktqsgvrkipmneevyqafqrviknrkgakpfiidgyanflflkqngypmtavdygg
mfgrlvkkynksheealpktttphamrhtfctrlanagmnpkalqyimghsnitmtlnfy
ahatfdsaraemerlaa

    Sequence, based on observed residues (ATOM records):
    >6emyA (A:)
mtvcqlyakqirhrgnvkhntklgrerlmrileqdrlgscpidsvklsdakewalrmkek
glsyktinndkrslkaafytaiqddirknpfdfqlsdvldddtepkvpltpaqeesflsf
iqgdkvyqkhydaivillgtglriselcgltdkdldfenrviivshqllrntgvgyyide
pktqsgvrkipmneevyqafqrviknrkgakpfiidgyanflflkqngypmtavdyggmf
grlvkkynksheealpktttphamrhtfctrlanagmnpkalqyimghsnitmtlnfyah
atfdsaraemerlaa

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6emyB (B:)
smtvcqlyakqirhrgnvkhntklgrerlmrileqdrlgscpidsvklsdakewalrmke
kglsyktinndkrslkaafytaiqddcirknpfdfqlsdvldddtepkvpltpaqeesfl
sfiqgdkvyqkhydaivillgtglriselcgltdkdldfenrviivshqllrntgvgyyi
depktqsgvrkipmneevyqafqrviknrkgakpfiidgyanflflkqngypmtavdygg
mfgrlvkkynksheealpktttphamrhtfctrlanagmnpkalqyimghsnitmtlnfy
ahatfdsaraemerlaa

    Sequence, based on observed residues (ATOM records):
    >6emyB (B:)
mtvcqlyakqirhrgnvkhntklgrerlmrileqdrlgscpidsvklsdakewalrmkek
glsyktinndkrslkaafytaiqddcirknpfdfqlsdvldddtepkvpltpaqeesfls
fiqgdkvyqkhydaivillgtglriselcgltdkdldfenrviivshqllrntgvgyyid
epktqsgvrkipmneevyqafqrviknrkgakpfiidgyanflflkqngypmtavdyggm
fgrlvkkynksheealpktttphamrhtfctrlanagmnpkalqyimghsnitmtlnfya
hatfdsaraemerlaa

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    No sequence available.

  • Chain 'E':
    No sequence available.

  • Chain 'F':
    No sequence available.