PDB entry 6emu

View 6emu on RCSB PDB site
Description: crystal structure of dual specific trm10 construct from thermococcus kodakaraensis.
Deposited on 2017-10-03, released 2018-06-13
The last revision was dated 2018-07-25, with a file datestamp of 2018-07-20.
Experiment type: XRAY
Resolution: 2.3 Å
R-factor: N/A
AEROSPACI score: 0.26 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: tRNA (guanine(9)-/adenine(9)-N1)-methyltransferase
    Species: Thermococcus kodakarensis [TaxId:311400]
    Gene: TK0422
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q5JD38 (Start-196)
      • engineered mutation (44)
  • Chain 'B':
    Compound: tRNA (guanine(9)-/adenine(9)-N1)-methyltransferase
    Species: Thermococcus kodakarensis [TaxId:311400]
    Gene: TK0422
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q5JD38 (Start-196)
      • engineered mutation (44)
  • Chain 'C':
    Compound: tRNA (guanine(9)-/adenine(9)-N1)-methyltransferase
    Species: Thermococcus kodakarensis [TaxId:311400]
    Gene: TK0422
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q5JD38 (Start-196)
      • engineered mutation (44)
  • Heterogens: SAM, GOL, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6emuA (A:)
mgsshhhhhhssglvprgshmdwpyfiidlyhwdkhtqkekgkialqvnqsygllrdyft
gselavtwaneefremfhgpldrittyggptseflkenginevvlldpwaeevlsekdfd
vkafiiggivdtggnkkkttpkigeelesagikvrrrkivlrgdvvgvpdrinrilgiil
kmmvegksmdeavyemq

    Sequence, based on observed residues (ATOM records):
    >6emuA (A:)
wpyfiidlyhwdkhtqkekgkialqvnqsygllrdyfelavtwaneefremfhgpldrit
tyggptseflkenginevvlldpwaeevlsekdfdvkafiiggivdtnkkkttpkigeel
esagikvrrrkivlrgdvvgvpdrinrilgiilkmmvegksmdeavyemq

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6emuB (B:)
mgsshhhhhhssglvprgshmdwpyfiidlyhwdkhtqkekgkialqvnqsygllrdyft
gselavtwaneefremfhgpldrittyggptseflkenginevvlldpwaeevlsekdfd
vkafiiggivdtggnkkkttpkigeelesagikvrrrkivlrgdvvgvpdrinrilgiil
kmmvegksmdeavyemq

    Sequence, based on observed residues (ATOM records):
    >6emuB (B:)
wpyfiidlyhwdkhtqkekgkialqvnqsygllrdyfgselavtwaneefremfhgpldr
ittyggptseflkenginevvlldpwaeevlsekdfdvkafiiggivkkttpkigeeles
agikvrrrkivlrgdvvgvpdrinrilgiilkmmvegksmdeavyemq

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6emuC (C:)
mgsshhhhhhssglvprgshmdwpyfiidlyhwdkhtqkekgkialqvnqsygllrdyft
gselavtwaneefremfhgpldrittyggptseflkenginevvlldpwaeevlsekdfd
vkafiiggivdtggnkkkttpkigeelesagikvrrrkivlrgdvvgvpdrinrilgiil
kmmvegksmdeavyemq

    Sequence, based on observed residues (ATOM records):
    >6emuC (C:)
pyfiidlyhwdkhtqkekgkialqvnqsygllrdyftelavtwaneefremfhgpldrit
tyggptseflkenginevvlldpwaeevlsekdfdvkafiiggivdtkkkttpkigeele
sagikvrrrkivlrgdvvgvpdrinrilgiilkmmvegksmdeavyemq