PDB entry 6eko

View 6eko on RCSB PDB site
Description: crystal structure of type iip restriction endonuclease pfoi with cognate dna
Deposited on 2017-09-26, released 2018-10-10
The last revision was dated 2019-04-24, with a file datestamp of 2019-04-19.
Experiment type: XRAY
Resolution: 2.28 Å
R-factor: N/A
AEROSPACI score: 0.24 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: restriction endonuclease PfoI
    Species: Pseudomonas fluorescens [TaxId:294]
    Database cross-references and differences (RAF-indexed):
    • PDB 6EKO (0-311)
  • Chain 'B':
    Compound: restriction endonuclease PfoI
    Species: Pseudomonas fluorescens [TaxId:294]
    Database cross-references and differences (RAF-indexed):
    • PDB 6EKO (0-311)
  • Chain 'E':
    Compound: DNA (5'-d(*cp*gp*cp*tp*cp*cp*cp*gp*gp*ap*gp*cp*gp*t)-3')
    Species: Pseudomonas fluorescens, synthetic [TaxId:294]
  • Chain 'F':
    Compound: DNA (5'-d(*cp*gp*cp*tp*cp*cp*cp*gp*gp*ap*gp*cp*gp*t)-3')
    Species: Pseudomonas fluorescens, synthetic [TaxId:294]
  • Heterogens: CA, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records:
    >6ekoA (A:)
mqkyrlyekdgspvqdfnrfvkgwldiefglkehqppkvfdtirdkyneaieavvlsgva
prtahkaalstltellfghdlakelsarldiqpigvggfrsahsqafaknvgenfvnlmv
yalacilkdnddvlvdkglpphlkkaltlsrecrikdtlreikipiegdlcvfsrsnhcn
aivisaatrlkevfhigtmwalfsdvakdeyclnkwglkvesseslkdtmyvfatadmin
kdgarsqgcdveretprnliamdasffdyvfvskmgighvssdlslkygreslfhelgci
idmieqkfdill

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records:
    >6ekoB (B:)
mqkyrlyekdgspvqdfnrfvkgwldiefglkehqppkvfdtirdkyneaieavvlsgva
prtahkaalstltellfghdlakelsarldiqpigvggfrsahsqafaknvgenfvnlmv
yalacilkdnddvlvdkglpphlkkaltlsrecrikdtlreikipiegdlcvfsrsnhcn
aivisaatrlkevfhigtmwalfsdvakdeyclnkwglkvesseslkdtmyvfatadmin
kdgarsqgcdveretprnliamdasffdyvfvskmgighvssdlslkygreslfhelgci
idmieqkfdill

  • Chain 'E':
    No sequence available.

  • Chain 'F':
    No sequence available.