PDB entry 6ekk
View 6ekk on RCSB PDB site
Description: Crystal structure of GEF domain of DENND 1A in complex with Rab GTPase Rab35-GDP bound state.
Class: transcription
Keywords: DENND1A- DENN domain-containing protein 1A RAB35- Ras-related protein Rab-35, transcription
Deposited on
2017-09-26, released
2018-10-17
The last revision prior to the SCOPe 2.08 freeze date was dated
2018-10-17, with a file datestamp of
2018-10-12.
Experiment type: XRAY
Resolution: 1.82 Å
R-factor: N/A
AEROSPACI score: 0.36
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: DENN domain-containing protein 1A
Species: Homo sapiens [TaxId:9606]
Gene: DENND1A, FAM31A, KIAA1608
Database cross-references and differences (RAF-indexed):
- Chain 'B':
Compound: DENN domain-containing protein 1A
Species: Homo sapiens [TaxId:9606]
Gene: DENND1A, FAM31A, KIAA1608
Database cross-references and differences (RAF-indexed):
- Chain 'C':
Compound: Ras-related protein Rab-35
Species: Homo sapiens [TaxId:9606]
Gene: RAB35, RAB1C, RAY
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d6ekkc_ - Chain 'D':
Compound: Ras-related protein Rab-35
Species: Homo sapiens [TaxId:9606]
Gene: RAB35, RAB1C, RAY
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d6ekkd_ - Heterogens: SO4, EDO, GDP, HOH
PDB Chain Sequences:
- Chain 'A':
No sequence available.
- Chain 'B':
No sequence available.
- Chain 'C':
Sequence; same for both SEQRES and ATOM records: (download)
>6ekkC (C:)
rdydhlfklliigdsgvgksslllrfadntfsgsyittigvdfkirtveingekvklqiw
dtagqerfrtitstyyrgthgvivvydvtsaesfvnvkrwlheinqncddvcrilvgnkn
ddperkvvetedaykfagqmgiqlfetsakenvnveemfncitelvlrakkdnlak
- Chain 'D':
Sequence, based on SEQRES records: (download)
>6ekkD (D:)
rdydhlfklliigdsgvgksslllrfadntfsgsyittigvdfkirtveingekvklqiw
dtagqerfrtitstyyrgthgvivvydvtsaesfvnvkrwlheinqncddvcrilvgnkn
ddperkvvetedaykfagqmgiqlfetsakenvnveemfncitelvlrakkdnlak
Sequence, based on observed residues (ATOM records): (download)
>6ekkD (D:)
dydhlfklliigdsgvgksslllrfadntfsgsyittigvdfkirtveingekvklqiwd
tagqerfrtitstyyrgthgvivvydvtsaesfvnvkrwlheinqncddvcrilvgnknd
dperkvvetedaykfagqmgiqlfetsakenvnveemfncitelvlrakkdnla