PDB entry 6ejd

View 6ejd on RCSB PDB site
Description: human xylosyltransferase 1 in complex with peptide qeeegsggpqgg
Deposited on 2017-09-20, released 2018-05-02
The last revision was dated 2018-06-13, with a file datestamp of 2018-06-08.
Experiment type: XRAY
Resolution: 2.68 Å
R-factor: N/A
AEROSPACI score: 0.18 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Xylosyltransferase 1
    Species: Homo sapiens [TaxId:9606]
    Gene: XYLT1, XT1
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Protein AMBP
    Species: HOMO SAPIENS, synthetic [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P02760
      • engineered mutation (8)
  • Heterogens: PO4, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6ejdA (A:)
    aplvhhhhhhaldenlyfqgaladvsrppharktggsspetkydqppkcdisgkeaisal
    srakskhcrqeigetycrhklgllmpekvtrfcplegkanknvqwdedsveympanpvri
    afvlvvhgrasrqlqrmfkaiyhkdhfyyihvdkrsnylhrqvlqvsrqysnvrvtpwrm
    atiwggasllstylqsmrdllemtdwpwdffinlsaadypirtndqlvaflsryrdmnfl
    kshgrdnarfirkqgldrlflecdahmwrlgdrripegiavdggsdwfllnrrfveyvtf
    stddlvtkmkqfysytllpaesffhtvlensphcdtmvdnnlritnwnrklgckcqykhi
    vdwcgcspndfkpqdfhrfqqtarptffarkfeavvnqeiigqldyylygnypagtpglr
    sywenvydepdgihslsdvtltlyhsfarlglrraetslhtdgenscryypmghpasvhl
    yfladrfqgflikhhatnlavskletletwvmpkkvfkiasppsdfgrlqfsevgtdwda
    kerlfrnfggllgpmdepvgmqkwgkgpnvtvtviwvdpvnviaatydiliestaefthy
    kpplnlplrpgvwtvkilhhwvpvaetkflvapltfsnrqpikpeealklhngplrnaym
    eqsfqslnpvlslpinpaqveqarrnaastgtalegwldslvggmwtamdicatgptacp
    vmqtcsqtawssfspdpkselgavkpdgrlr
    

    Sequence, based on observed residues (ATOM records):
    >6ejdA (A:)
    qppkcdisgkeaisalsrakskhcrqeigetycrhklgllmpekvtrfcplegkanveym
    panpvriafvlvvhgrasrqlqrmfkaiyhkdhfyyihvdkrsnylhrqvlqvsrqysnv
    rvtpwrmatiwggasllstylqsmrdllemtdwpwdffinlsaadypirtndqlvaflsr
    yrdmnflkshgrdnarfirkqgldrlflecdahmwrlgdrripegiavdggsdwfllnrr
    fveyvtfstddlvtkmkqfysytllpaesffhtvlensphcdtmvdnnlritnwnrklgc
    kcqykhivdwcgcspndfkpqdfhrfqqtarptffarkfeavvnqeiigqldyylygnyp
    agtpglrsywenvydepdgihslsdvtltlyhsfarlglrraetslhtdgenscryypmg
    hpasvhlyfladrfqgflikhhatnlavskletletwvmpkkvfkidfgrlqfsevgtdw
    dakerlfrnfggllgpmdepvgmqkwgkgpnvtvtviwvdpvnviaatydiliestaeft
    hykpplnlplrpgvwtvkilhhwvpvaetkflvapltfsnrqpikpeealklhngplrna
    ymeqsfqslnpvlslpinpaqveqarrnaastgtalegwldslvggmwtamdicatgpta
    cpvmqtcsqtawssfspdpkselgavkpdgrlr
    

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6ejdB (B:)
    qeeegsggpqgg
    

    Sequence, based on observed residues (ATOM records):
    >6ejdB (B:)
    eeegsggpq