PDB entry 6ej8

View 6ej8 on RCSB PDB site
Description: human xylosyltransferase 1 in complex with peptide qeeegsgggqgg
Deposited on 2017-09-20, released 2018-05-02
The last revision was dated 2020-07-29, with a file datestamp of 2020-06-29.
Experiment type: XRAY
Resolution: 2.09 Å
R-factor: N/A
AEROSPACI score: 0.35 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Xylosyltransferase 1
    Species: Homo sapiens [TaxId:9606]
    Gene: XYLT1, XT1
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Protein AMBP
    Species: HOMO SAPIENS, synthetic [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
  • Heterogens: NAG, NA, PO4, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6ej8A (A:)
    ralaaplvhhhhhhaldenlyfqgaladvsrppharktggsspetkydqppkcdisgkea
    isalsrakskhcrqeigetycrhklgllmpekvtrfcplegkanknvqwdedsveympan
    pvriafvlvvhgrasrqlqrmfkaiyhkdhfyyihvdkrsnylhrqvlqvsrqysnvrvt
    pwrmatiwggasllstylqsmrdllemtdwpwdffinlsaadypirtndqlvaflsryrd
    mnflkshgrdnarfirkqgldrlflecdahmwrlgdrripegiavdggsdwfllnrrfve
    yvtfstddlvtkmkqfysytllpaesffhtvlensphcdtmvdnnlritnwnrklgckcq
    ykhivdwcgcspndfkpqdfhrfqqtarptffarkfeavvnqeiigqldyylygnypagt
    pglrsywenvydepdgihslsdvtltlyhsfarlglrraetslhtdgenscryypmghpa
    svhlyfladrfqgflikhhatnlavskletletwvmpkkvfkiasppsdfgrlqfsevgt
    dwdakerlfrnfggllgpmdepvgmqkwgkgpnvtvtviwvdpvnviaatydiliestae
    fthykpplnlplrpgvwtvkilhhwvpvaetkflvapltfsnrqpikpeealklhngplr
    naymeqsfqslnpvlslpinpaqveqarrnaastgtalegwldslvggmwtamdicatgp
    tacpvmqtcsqtawssfspdpkselgavkpdgrlr
    

    Sequence, based on observed residues (ATOM records):
    >6ej8A (A:)
    dqppkcdisgkeaisalsrakskhcrqeigetycrhklgllmpekvtrfcplegkanknq
    wdedsveympanpvriafvlvvhgrasrqlqrmfkaiyhkdhfyyihvdkrsnylhrqvl
    qvsrqysnvrvtpwrmatiwggasllstylqsmrdllemtdwpwdffinlsaadypirtn
    dqlvaflsryrdmnflkshgrdnarfirkqgldrlflecdahmwrlgdrripegiavdgg
    sdwfllnrrfveyvtfstddlvtkmkqfysytllpaesffhtvlensphcdtmvdnnlri
    tnwnrklgckcqykhivdwcgcspndfkpqdfhrfqqtarptffarkfeavvnqeiigql
    dyylygnypagtpglrsywenvydepdgihslsdvtltlyhsfarlglrraetslhtdge
    nscryypmghpasvhlyfladrfqgflikhhatnlavskletletwvmpkkvfkiaspgr
    lqfsevgtdwdakerlfrnfggllgpmdepvgmqkwgkgpnvtvtviwvdpvnviaatyd
    iliestaefthykpplnlplrpgvwtvkilhhwvpvaetkflvapltfsnrqpikpeeal
    klhngplrnaymeqsfqslnpvlslpinpaqveqarrnaastgtalegwldslvggmwta
    mdicatgptacpvmqtcsqtawssfspdpkselgavkpdgrlr
    

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6ej8B (B:)
    qeeegsgggqgg
    

    Sequence, based on observed residues (ATOM records):
    >6ej8B (B:)
    eeegsgggq