PDB entry 6ej7

View 6ej7 on RCSB PDB site
Description: human xylosyltransferase 1 in complex with udp-xylose and peptide qeeegagggqgg
Deposited on 2017-09-20, released 2018-05-02
The last revision was dated 2020-07-29, with a file datestamp of 2020-06-29.
Experiment type: XRAY
Resolution: 2 Å
R-factor: N/A
AEROSPACI score: 0.39 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Xylosyltransferase 1
    Species: Homo sapiens [TaxId:9606]
    Gene: XYLT1, XT1
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Protein AMBP
    Species: HOMO SAPIENS, synthetic [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P02760
      • engineered mutation (5)
      • engineered mutation (10)
  • Heterogens: UDX, NAG, NA, PO4, EDO, PEG, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6ej7A (A:)
aplvhhhhhhaldenlyfqgaladvsrppharktggsspetkydqppkcdisgkeaisal
srakskhcrqeigetycrhklgllmpekvtrfcplegkanknvqwdedsveympanpvri
afvlvvhgrasrqlqrmfkaiyhkdhfyyihvdkrsnylhrqvlqvsrqysnvrvtpwrm
atiwggasllstylqsmrdllemtdwpwdffinlsaadypirtndqlvaflsryrdmnfl
kshgrdnarfirkqgldrlflecdahmwrlgdrripegiavdggsdwfllnrrfveyvtf
stddlvtkmkqfysytllpaesffhtvlensphcdtmvdnnlritnwnrklgckcqykhi
vdwcgcspndfkpqdfhrfqqtarptffarkfeavvnqeiigqldyylygnypagtpglr
sywenvydepdgihslsdvtltlyhsfarlglrraetslhtdgenscryypmghpasvhl
yfladrfqgflikhhatnlavskletletwvmpkkvfkiasppsdfgrlqfsevgtdwda
kerlfrnfggllgpmdepvgmqkwgkgpnvtvtviwvdpvnviaatydiliestaefthy
kpplnlplrpgvwtvkilhhwvpvaetkflvapltfsnrqpikpeealklhngplrnaym
eqsfqslnpvlslpinpaqveqarrnaastgtalegwldslvggmwtamdicatgptacp
vmqtcsqtawssfspdpkselgavkpdgrlr

    Sequence, based on observed residues (ATOM records):
    >6ej7A (A:)
dqppkcdisgkeaisalsrakskhcrqeigetycrhklgllmpekvtrfcplegkanknv
qwdedsveympanpvriafvlvvhgrasrqlqrmfkaiyhkdhfyyihvdkrsnylhrqv
lqvsrqysnvrvtpwrmatiwggasllstylqsmrdllemtdwpwdffinlsaadypirt
ndqlvaflsryrdmnflkshgrdnarfirkqgldrlflecdahmwrlgdrripegiavdg
gsdwfllnrrfveyvtfstddlvtkmkqfysytllpaesffhtvlensphcdtmvdnnlr
itnwnrklgckcqykhivdwcgcspndfkpqdfhrfqqtarptffarkfeavvnqeiigq
ldyylygnypagtpglrsywenvydepdgihslsdvtltlyhsfarlglrraetslhtdg
enscryypmghpasvhlyfladrfqgflikhhatnlavskletletwvmpkkvfkiaspd
fgrlqfsevgtdwdakerlfrnfggllgpmdepvgmqkwgkgpnvtvtviwvdpvnviaa
tydiliestaefthykpplnlplrpgvwtvkilhhwvpvaetkflvapltfsnrqpikpe
ealklhngplrnaymeqsfqslnpvlslpinpaqveqarrnaastgtalegwldslvggm
wtamdicatgptacpvmqtcsqtawssfspdpkselgavkpdgrlr

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6ej7B (B:)
qeeegagggqgg

    Sequence, based on observed residues (ATOM records):
    >6ej7B (B:)
eeegagggqg