PDB entry 6ej1

View 6ej1 on RCSB PDB site
Description: Crystal structure of KDM5B in complex with KDOPZ48a.
Class: oxidoreductase
Keywords: KDM5B Lysine specific demethylase, Oxidoreductase
Deposited on 2017-09-19, released 2018-05-02
The last revision prior to the SCOPe 2.08 freeze date was dated 2018-05-02, with a file datestamp of 2018-04-27.
Experiment type: XRAY
Resolution: 2.07 Å
R-factor: N/A
AEROSPACI score: 0.29 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Lysine-specific demethylase 5B,Lysine-specific demethylase 5B
    Species: Homo sapiens [TaxId:9606]
    Gene: KDM5B, JARID1B, PLU1, RBBP2H1
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9UGL1 (1-73)
      • initiating methionine (0)
    • Uniprot Q9UGL1 (79-458)
    Domains in SCOPe 2.08: d6ej1a1, d6ej1a2, d6ej1a3
  • Heterogens: B7Q, ZN, MN, DMS, EDO, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6ej1A (A:)
mflpppecpvfepsweefadpfafihkirpiaeqtgickvrpppdwqppfacdvdklhft
priqrlneleaqtrgggggrdytlrtfgemadafksdyfnmpvhmvptelvekefwrlvs
tieedvtveygadiaskefgsgfpvrdgkiklspeeeeyldsgwnlnnmpvmeqsvlahi
tadicgmklpwlyvgmcfssfcwhiedhwsysinylhwgepktwygvpgyaaeqlenvmk
klapelfvsqpdllhqlvtimnpntlmthevpvyrtnqcagefvitfprayhsgfnqgfn
faeavnfctvdwlplgrqcvehyrllhrycvfshdemickmaskadvldvvvastvqkdm
aimiedekalretvrklgvidsermdfellpdderqcvkckttcfmsaiscsckpgllvc
lhhvkelcscppykyklryrytlddlypmmnalklraes

    Sequence, based on observed residues (ATOM records): (download) 
    >6ej1A (A:)
mflpppecpvfepsweefadpfafihkirpiaeqtgickvrpppdwqppfacdvdklhft
priqrlneleaqtrrdytlrtfgemadafksdyfnmpvhmvptelvekefwrlvstieed
vtveygadiaskefgsgfpvrdgiklspeeeeyldsgwnlnnmpvmeqsvlahitadicg
mklpwlyvgmcfssfcwhiedhwsysinylhwgepktwygvpgyaaeqlenvmkklapel
fvsqpdllhqlvtimnpntlmthevpvyrtnqcagefvitfprayhsgfnqgfnfaeavn
fctvdwlplgrqcvehyrllhrycvfshdemickmaskadvldvvvastvqkdmaimied
ekalretvrklgvidsermdfellpdderqcvkckttcfmsaiscsckpgllvclhhvke
lcscppykyklryrytlddlypmmnalklraes