PDB entry 6eiy

View 6eiy on RCSB PDB site
Description: Crystal structure of KDM5B in complex with KDOPZ000034a.
Class: oxidoreductase
Keywords: KDM5B Lysine specific demethylase, OXIDOREDUCTASE
Deposited on 2017-09-19, released 2018-05-02
The last revision prior to the SCOPe 2.08 freeze date was dated 2018-05-02, with a file datestamp of 2018-04-27.
Experiment type: XRAY
Resolution: 2.15 Å
R-factor: N/A
AEROSPACI score: 0.28 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Lysine-specific demethylase 5B,Lysine-specific demethylase 5B
    Species: Homo sapiens [TaxId:9606]
    Gene: KDM5B, JARID1B, PLU1, RBBP2H1
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9UGL1 (1-75)
      • initiating methionine (0)
    • Uniprot Q9UGL1 (80-460)
    Domains in SCOPe 2.08: d6eiya1, d6eiya2, d6eiya3
  • Heterogens: B6W, ZN, MN, EDO, DMS, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6eiyA (A:)
mflpppecpvfepsweefadpfafihkirpiaeqtgickvrpppdwqppfacdvdklhft
priqrlneleaqtrvkggggardytlrtfgemadafksdyfnmpvhmvptelvekefwrl
vstieedvtveygadiaskefgsgfpvrdgkiklspeeeeyldsgwnlnnmpvmeqsvla
hitadicgmklpwlyvgmcfssfcwhiedhwsysinylhwgepktwygvpgyaaeqlenv
mkklapelfvsqpdllhqlvtimnpntlmthevpvyrtnqcagefvitfprayhsgfnqg
fnfaeavnfctvdwlplgrqcvehyrllhrycvfshdemickmaskadvldvvvastvqk
dmaimiedekalretvrklgvidsermdfellpdderqcvkckttcfmsaiscsckpgll
vclhhvkelcscppykyklryrytlddlypmmnalklraes

    Sequence, based on observed residues (ATOM records): (download) 
    >6eiyA (A:)
mflpppecpvfepsweefadpfafihkirpiaeqtgickvrpppdwqppfacdvdklhft
priqrlneleaqtrvkardytlrtfgemadafksdyfnmpvhmvptelvekefwrlvsti
eedvtveygadiaskefgsgfpvrdgiklspeeeeyldsgwnlnnmpvmeqsvlahitad
icgmklpwlyvgmcfssfcwhiedhwsysinylhwgepktwygvpgyaaeqlenvmkkla
pelfvsqpdllhqlvtimnpntlmthevpvyrtnqcagefvitfprayhsgfnqgfnfae
avnfctvdwlplgrqcvehyrllhrycvfshdemickmaskadvldvvvastvqkdmaim
iedekalretvrklgvidsermdfellpdderqcvkckttcfmsaiscsckpgllvclhh
vkelcscppykyklryrytlddlypmmnalklraes