PDB entry 6eit

View 6eit on RCSB PDB site
Description: coxsackievirus a24v in complex with the d1-d2 fragment of icam-1
Deposited on 2017-09-19, released 2018-01-10
The last revision was dated 2018-01-17, with a file datestamp of 2018-01-12.
Experiment type: EM
Resolution: 3.9 Å
R-factor: N/A
AEROSPACI score: 0.07 (click here for full SPACI score report)

Chains and heterogens:

  • Chain '1':
    Compound: vp1
    Species: Coxsackievirus A24 [TaxId:12089]
    Database cross-references and differences (RAF-indexed):
  • Chain '2':
    Compound: vp2
    Species: Coxsackievirus A24 [TaxId:12089]
    Database cross-references and differences (RAF-indexed):
  • Chain '3':
    Compound: vp3
    Species: Coxsackievirus A24 [TaxId:12089]
    Database cross-references and differences (RAF-indexed):
  • Chain '4':
    Compound: Intercellular adhesion molecule 1
    Species: Homo sapiens [TaxId:9606]
    Gene: ICAM1
    Database cross-references and differences (RAF-indexed):

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain '1':
    Sequence, based on SEQRES records:
    >6eit1 (1:)
gieetidtvitnalqlsqpkpqkqptaqstpltsgvnsqevpaltavetgasgqavpsdv
ietrhvvnyktrsestlesffgrsacvtilevenfnattdadrkkqfttwaitytdtvql
rrklefftysrfdlemtfviteryyasntgharnqvyqlmyippgaprptawddytwqss
snpsvfytygsapprmsipyvgianayshfydgfarvplkdetvdsgdtyyglvtindfg
tlavrvvneynparitskirvymkpkhvrcwcprppravpyrgegvdfkqdsitpltave
nintf

    Sequence, based on observed residues (ATOM records):
    >6eit1 (1:)
taqstpltsgvnsqevpaltavetgasgqavpsdvietrhvvnyktrsestlesffgrsa
cvtilevenfnattdadrkkqfttwaitytdtvqlrrklefftysrfdlemtfviteryy
asntgharnqvyqlmyippgaprptawddytwqsssnpsvfytygsapprmsipyvgian
ayshfydgfarvplkdetvdsgdtyyglvtindfgtlavrvvneynparitskirvymkp
khvrcwcprppravpyrgegvdfkqdsitpltavenintf

  • Chain '2':
    Sequence, based on SEQRES records:
    >6eit2 (2:)
spnveacgysdrvrqitlgnstittqeaanavvaygewpsylddkeanpidaptepdvss
nrfytldsvqwkstsrgwwwklpdalkdmgmfgqnmyyhylgrsgytvhvqcnaskfhqg
algvfaipeyvmacnteaktsyvsyvnanpgekggvfdnaynpsaeasegrkfaaldyll
gcgvlagnafvyphqiinlrtnnsatlvlpyvnslaidcmakhnnwglvilplckldyap
nssteipitvtiapmftefnglrnitvpatq

    Sequence, based on observed residues (ATOM records):
    >6eit2 (2:)
gysdrvrqitlgnstittqeaanavvaygewpsylddkeanpidaptepdvssnrfytld
svqwkstsrgwwwklpdalkdmgmfgqnmyyhylgrsgytvhvqcnaskfhqgalgvfai
peyvmacnteaktsyvsyvnanpgekggvfdnaynpsaeasegrkfaaldyllgcgvlag
nafvyphqiinlrtnnsatlvlpyvnslaidcmakhnnwglvilplckldyapnssteip
itvtiapmftefnglrnitvpatq

  • Chain '3':
    Sequence, based on SEQRES records:
    >6eit3 (3:)
glptmltpgssqfltsddfqspcalpnfdvtppihipgevfnmmelaeidsmipmnsvtg
kantmemypiplddkgsatpifsislspasdkrlqytmlgeilnyythwtgslrftflfc
gsmmatgkillsysppgakppttrkdamlgthiiwdlglqssctmlapwisntvyrrcik
ddfteggyitcfyqtrivvpsgtptsmfmlafvsacpdfsvrllrdtnhisqrtlfaraq

    Sequence, based on observed residues (ATOM records):
    >6eit3 (3:)
glptmltpgssqfltsddfqspcalpnfdvtppihipgevfnmmelaeidsmipmnsvtg
kantmemypiplddkgsatpifsislspasdkrlqytmlgeilnyythwtgslrftflfc
gsmmatgkillsysppgakppttrkdamlgthiiwdlglqssctmlapwisntvyrrcik
ddfteggyitcfyqtrivvpsgtptsmfmlafvsacpdfsvrllrdtnhis

  • Chain '4':
    Sequence; same for both SEQRES and ATOM records:
    >6eit4 (4:)
qtsvspskvilprggsvlvtcstscdqpkllgietplpkkelllpgnnrkvyelsnvqed
sqpmcysncpdgqstaktfltvywt