PDB entry 6ef0

View 6ef0 on RCSB PDB site
Description: yeast 26s proteasome bound to ubiquitinated substrate (1d* motor state)
Deposited on 2018-08-15, released 2018-10-17
The last revision was dated 2019-12-18, with a file datestamp of 2019-12-13.
Experiment type: EM
Resolution: 4.43 Å
R-factor: N/A
AEROSPACI score: 0.02 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Proteasome subunit alpha type-1
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
    Gene: SCL1, PRC2, PRS2, YGL011C
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Proteasome subunit alpha type-2
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
    Gene: PRE8, PRS4, YML092C
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Proteasome subunit alpha type-3
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
    Gene: PRE9, PRS5, YGR135W
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Proteasome subunit alpha type-4
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
    Gene: PRE6, YOL038W
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: Proteasome subunit alpha type-5
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
    Gene: PUP2, DOA5, YGR253C, G9155
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: Proteasome subunit alpha type-6
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
    Gene: PRE5, YMR314W, YM9924.06
    Database cross-references and differences (RAF-indexed):
  • Chain 'G':
    Compound: probable proteasome subunit alpha type-7
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
    Gene: PRE10, PRC1, PRS1, YOR362C, O6650
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: 26S proteasome regulatory subunit 7 homolog
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
    Gene: RPT1, CIM5, YTA3, YKL145W
    Database cross-references and differences (RAF-indexed):
  • Chain 'I':
    Compound: 26S proteasome regulatory subunit 4 homolog
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
    Gene: RPT2, YHS4, YTA5, YDL007W, D2920
    Database cross-references and differences (RAF-indexed):
  • Chain 'J':
    Compound: 26S proteasome regulatory subunit 8 homolog
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
    Gene: RPT6, CIM3, CRL3, SUG1, TBPY, TBY1, YGL048C
    Database cross-references and differences (RAF-indexed):
  • Chain 'K':
    Compound: 26S proteasome regulatory subunit 6B homolog
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
    Gene: RPT3, YNT1, YTA2, YDR394W, D9509.14
    Database cross-references and differences (RAF-indexed):
  • Chain 'L':
    Compound: 26S proteasome subunit RPT4
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
    Gene: RPT4, CRL13, PCS1, SUG2, YOR259C
    Database cross-references and differences (RAF-indexed):
  • Chain 'M':
    Compound: 26S proteasome regulatory subunit 6A
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
    Gene: RPT5, YTA1, YOR117W, O3258, YOR3258W
    Database cross-references and differences (RAF-indexed):
  • Chain 's':
    Compound: model substrate polypeptide
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6EF0 (0-11)
  • Heterogens: ADP, ATP

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records:
    >6ef0A (A:)
    gydrhitifspegrlyqveyafkatnqtninslavrgkdctvvisqkkvpdklldpttvs
    yifcisrtigmvvngpipdarnaalrakaeaaefrykygydmpcdvlakrmanlsqiytq
    raymrplgviltfvsvdeelgpsiyktdpagyyvgykatatgpkqqeittnlenhfkksk
    idhineeswekvvefaithmidalgtefskndlevgvatkdkfftlsaenieerlvai
    

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records:
    >6ef0B (B:)
    mtdrysfslttfspsgklgqidyaltavkqgvtslgikatngvviatekksssplamset
    lskvslltpdigavysgmgpdyrvlvdksrkvahtsykriygeypptkllvsevakimqe
    atqsggvrpfgvslliaghdefngfslyqvdpsgsyfpwkataigkgsvaaktflekrwn
    deleledaihialltlkesvegefngdtielaiigdenpdllgytgiptdkgprfrklts
    qeindrleal
    

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records:
    >6ef0C (C:)
    mgsrrydsrttifspegrlyqveyalesishagtaigimasdgivlaaerkvtstlleqd
    tsteklyklndkiavavagltadaeilintarihaqnylktynedipveilvrrlsdikq
    gytqhgglrpfgvsfiyagyddrygyqlytsnpsgnytgwkaisvgantsaaqtllqmdy
    kddmkvddaielalktlskttdssaltydrlefatirkgandgevyqkifkpqeikdilv
    ktgi
    

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records:
    >6ef0D (D:)
    msgydralsifspdghifqveyaleavkrgtcavgvkgkncvvlgcerrstlklqdtrit
    pskvskidshvvlsfsglnadsriliekarveaqshrltledpvtveyltryvagvqqry
    tqsggvrpfgvstliagfdprddepklyqtepsgiysswsaqtigrnsktvrefleknyd
    rkeppatveecvkltvrsllevvqtgaknieitvvkpdsdivalsseeinqyvtqieqek
    qe
    

  • Chain 'E':
    Sequence; same for both SEQRES and ATOM records:
    >6ef0E (E:)
    mfltrseydrgvstfspegrlfqveysleaiklgstaigiatkegvvlgvekratsplle
    sdsiekiveidrhigcamsgltadarsmiehartaavthnlyydedinvesltqsvcdla
    lrfgegasgeerlmsrpfgvalliaghdaddgyqlfhaepsgtfyrynakaigsgsegaq
    aellnewhssltlkeaellvlkilkqvmeekldennaqlscitkqdgfkiydnektaeli
    kelkekeaa
    

  • Chain 'F':
    Sequence; same for both SEQRES and ATOM records:
    >6ef0F (F:)
    mfrnnydgdtvtfsptgrlfqveyaleaikqgsvtvglrsnthavlvalkrnadelssyq
    kkiikcdehmglslaglapdarvlsnylrqqcnysslvfnrklaveraghllcdkaqknt
    qsyggrpygvglliigydksgahllefqpsgnvtelygtaigarsqgaktylertldtfi
    kidgnpdelikagveaisqslrdesltvdnlsiaivgkdtpftiydgeavakyi
    

  • Chain 'G':
    Sequence; same for both SEQRES and ATOM records:
    >6ef0G (G:)
    sigtgydlsnsvfspdgrnfqveyavkavengttsigikcndgvvfaveklitskllvpq
    knvkiqvvdrhigcvysglipdgrhlvnrgreeaasfkklyktpipipafadrlgqyvqa
    htlynsvrpfgvstifggvdkngahlymlepsgsywgykgaatgkgrqsakaeleklvdh
    hpeglsareavkqaakiiylahednkekdfeleiswcslsetnglhkfvkgdllqeaidf
    aqkein
    

  • Chain 'H':
    Sequence; same for both SEQRES and ATOM records:
    >6ef0H (H:)
    eekpdvtysdvggckdqieklrevvelpllsperfatlgidppkgillygppgtgktlca
    ravanrtdatfirvigselvqkyvgegarmvrelfemartkkaciiffdeidavggarfd
    dgaggdnevqrtmlelitqldgfdprgnikvmfatnrpntldpallrpgridrkvefslp
    dlegranifrihsksmsvergirwelisrlcpnstgaelrsvcteagmfairarrkvate
    kdflkavdkvisgykkf
    

  • Chain 'I':
    Sequence; same for both SEQRES and ATOM records:
    >6ef0I (I:)
    pmvsvmkmdksptesysdigglesqiqeikesvelplthpelyeemgikppkgvilygap
    gtgktllakavanqtsatflrivgseliqkylgdgprlcrqifkvagenapsivfideid
    aigtkrydsnsggereiqrtmlellnqldgfddrgdvkvimatnkietldpalirpgrid
    rkilfenpdlstkkkilgihtskmnlsedvnletlvttkddlsgadiqamcteagllalr
    errmqvtaedfkqakervmknkveenlegly
    

  • Chain 'J':
    Sequence, based on SEQRES records:
    >6ef0J (J:)
    adplvslmmvekvpdstydmvggltkqikeikevielpvkhpelfeslgiaqpkgvilyg
    ppgtgktllaravahhtdckfirvsgaelvqkyigegsrmvrelfvmarehapsiifmde
    idsigstrvegsgggdsevqrtmlellnqldgfetsknikiimatnrldildpallrpgr
    idrkiefpppsvaaraeilrihsrkmnltrginlrkvaekmngcsgadvkgvcteagmya
    lrerrihvtqedfelavgkvmnknqetaisvaklfk
    

    Sequence, based on observed residues (ATOM records):
    >6ef0J (J:)
    adplvslmmvekvpdstydmvggltkqikeikevielpvkhpelfeslgiaqpkgvilyg
    ppgtgktllaravahhtdckfirvsgaelvqkyigegsrmvrelfvmarehapsiifmde
    idsigstrvegsgggdsevqrtmlellnqldgfetsknikiimatnrldildpallrpgr
    idrkiefpppsvaaraeilrihsrkmnltrginlrkvaekmngcsgadvkgvcteagmya
    lrerrihvtqedfelavgkvmnknqsvaklfk
    

  • Chain 'K':
    Sequence; same for both SEQRES and ATOM records:
    >6ef0K (K:)
    sisvmgenekpdvtyadvggldmqkqeireavelplvqadlyeqigidpprgvllygppg
    tgktmlvkavanstkaafirvngsefvhkylgegprmvrdvfrlarenapsiifidevds
    iatkrfdaqtgsdrevqrilielltqmdgfdqstnvkvimatnradtldpallrpgrldr
    kiefpslrdrrerrlifgtiaskmslapeadldsliirndslsgaviaaimqeaglravr
    knryvilqsdleeayatqvktdntvdkfdfyk
    

  • Chain 'L':
    Sequence; same for both SEQRES and ATOM records:
    >6ef0L (L:)
    dplvynmtsfeqgeitfdgigglteqirelrevielplknpeifqrvgikppkgvllygp
    pgtgktllakavaatiganfifspasgivdkyigesariiremfayakehepciifmdev
    daiggrrfsegtsadreiqrtlmelltqmdgfdnlgqtkiimatnrpdtldpallrpgrl
    drkveiplpneagrleifkihtakvkktgefdfeaavkmsdgfngadirncateagffai
    rddrdhinpddlmkavrkvaevkklegtieyqk
    

  • Chain 'M':
    Sequence; same for both SEQRES and ATOM records:
    >6ef0M (M:)
    ptetysdvggldkqieelveaivlpmkradkfkdmgirapkgalmygppgtgktllarac
    aaqtnatflklaapqlvqmyigegaklvrdafalakekaptiifideldaigtkrfdsek
    sgdrevqrtmlellnqldgfssddrvkvlaatnrvdvldpallrsgrldrkiefplpsed
    sraqilqihsrkmttdddinwqelarstdefngaqlkavtveagmialrngqssvkhedf
    vegisevqarksksvsfy
    

  • Chain 's':
    Sequence; same for both SEQRES and ATOM records:
    >6ef0s (s:)
    sarlggasiavq