PDB entry 6ees

View 6ees on RCSB PDB site
Description: fitted model of s. pombe mdn1 into the cryo-em map obtained in the presence of atp and rbin-1
Deposited on 2018-08-15, released 2018-10-17
Made obsolete by 6orb on 2019-05-29

The last revision was dated 2019-05-29, with a file datestamp of 2019-05-24.
Experiment type: EM
Resolution: 7.7 Å
R-factor: N/A
AEROSPACI score: -0.12 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Midasin
    Species: Schizosaccharomyces pombe (strain 972 / ATCC 24843) [TaxId:284812]
    Gene: mdn1, SPCC737.08
    Database cross-references and differences (RAF-indexed):
    • Uniprot O94248 (Start-2146)
    • PDB 6EES (2147-2327)
    • Uniprot O94248 (2328-End)

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6eesA (A:)
    mdvliewvaiypqiydilehinyvpsntlqrlrlhqpwskidydvwflyasdeiretckv
    kyygetktygevfvlenerisqlhrlfvswtvseraehlknllfdaglsnlplvelggnv
    ffnshvplpcslvltkstqenlnritpylvqkrpillagpegigkkflitqiaaklgqqi
    irihlsdstdpkmligtytspkpgefewqpgvltqavitgkwilftniehapsevlsvll
    pllekrqlvipsrgetiyakgsfqmfatssmktkilgqrlwqildltyqpdecvevvstl
    ypvlsiicptlysvykdifdlfsqrsflatskiyrrlclrdfykfikrvaflyhkfmips
    dhvvisqelqdavfkeaidmfgafipsrdgfdlvvrnvaielnippekalqlrysipvfq
    nlehninigrcslkklstirscstnsyaftssslglleqlaagvqtneplllvgetgtgk
    tttiqllagllgqkvtvinmsqqtessdmlggykpinastlglplherfidifeqtfssk
    knakfismastsarrfrwktclkiwkeacklsktvldgqqplpnpqkrqkrlsnqvelrn
    qwakfekevedfekvltggsngfmfsfvegalvkavrsghwvlldeinlasletlepigq
    llssyesgillsergditpitphknfrlfgcmnpstdvgkrelepsfrsrfteiyvhspd
    qnlddllsiiqkyigslcignehvirevaelyqvakslsldgslvdgagqrphytvrtls
    rtlsyvteiapiyglrrslyegfcmsfltlldhtsesllynhvvrftlgelnrdqqnail
    kqipkvpdhssyiafchywlrrgsfpveeqehyiitpfvqknllniaracstrmfpiliq
    gptssgktsmieyvakktghkfvrinnhehtdlqeyigtyvtddngslsfregvlvealr
    ngywivldelnlaptdvlealnrllddnrelfipetqvlvkphpefmlfatqnppgvyag
    rkhlsrafrnrfleihfddipeneletilhkrckiapsyaakivqvfrelslrrqttrif
    eqknsfatlrdlfrwafreavgyqqlaengymllaerardqkdklavqeviekvmkvkid
    tdgiynldsmeifqdmslkegplskvvwtrpmirlfclvwrcllakepvllvgdtgcgkt
    tvcqilaeclhkelhiinahqdtengdiigaqrpvrnrsavnyslhsqlcekfnvqesld
    siddliekfeklsssekndnlsnlierqiikyrslfewhdgalvtamkqgdfflldeisl
    addsvlerlnsvlelsrtltlvehsnaavsltakdgfaffatmnpggdygkkelspalrn
    rfteiwvppmvdtedilkivegklhnnkielarplveyakwhaneylytdvisirdvlsa
    vefinaceildlnlvlfnavsmvfidalgsfttfslsnnlaslhaerqrcfaklnelags
    nimasksadisikfsdssffigdfgiplgdsvesdstyslhtdttlmnaskvlralqvlk
    pillegspgvgktslitalaretghqlvrinlsdqtdlmdlfgsdvpveggeggqfawrd
    apflaamrnghwvlldelnlasqsvleglnacldhrneayipeldkvfkahpnfrvfaaq
    npqhqgggrkglprsfinrfsvvyvealkekdmieiaacnyhqvnedwrlkiikfmfrlq
    dniekdisfgsfgspwefnlrdtlrwlqllndapkytcvspadylevmvlhrmrtvedrv
    rtcelfkevfdidyeprtigfslssqcfkvghsllvrdverqktlldsqnilqsqlpvle
    svitcinkkwpcilvgdtatgktcilrllaaiagakikemavnsdtdtmdligeyeqidi
    srkaselftdlsqqllnivikyrnfdnifretslytltttsfkthsqaftllqkvvdqld
    qlkihetlvhslgdihekarkllaefsaspagrfewfdgyllkaveeghwfvldnanlcs
    pavldrlnsllehkgvlivnekttedghpktikphpnfrlfltvnpvygelsramrnrgv
    eifllkealteidkkqmsllepapissavdtlasnisyikyvfetmgxxxxxxxxxxxxx
    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxpskrtyqvmisi
    ddsksmsesgstvlaletlalvtkalsllevgqiavmkfgeqpellhpfdkqfssesgvq
    mfshftfeqsntnvlaladasmkcfnyantashhrsnsdirqleiiisdgicedhdsirk
    llrraqeekvmivfvildnvntqkkssildikkvyydtkedgtmdlkiqpyidefafdyy
    lvvrnieelpqllssalrqwfqqmsnt
    

    Sequence, based on observed residues (ATOM records):
    >6eesA (A:)
    dvliewvaiypqiydilehinyvpsntlqrlrlhqpwskidydvwflyasdeiretckvk
    yygetktygevfvlenerisqlhrlfvseraehlknllfdalplvelggnvffnslvltk
    stqenlnritpylvqkrpillaegigkkflitqiaaklgqqiirihlsdstdpkmligty
    twqpgvltqavitwilftniehevlsvllpllekrqlvipsrgetiyakgsfqmfatssm
    ktkilgqrlwqilyqpdecvevvstlypvlsiicptlysvykdifdlfsskiyrrlclrd
    fykfikrvaflyhkvfkeaidmfgafipsrdgfdlvvrnvaielnippekalqlssslgl
    leqlaagvqtneplllvgetgtgktttiqllagllgqkvtvinmsqqtessdmlggalvk
    avrsghwvlldeinlasletlepigqllsphknfrlfgcmnpepsfrsrfteiyvhdlls
    iiqkyigsnehvirevaelyqvakslsldphytvrtlsrtlsyvteiapiyglrrslyeg
    fcmsfltlldhtsesllynhvvrftlgnrdqqnailkqipkvpdyiafchywlrrgqehy
    iitpfvqknllniaracstrmpiliqgptssgktsmieyvakktghkfvrinnhehtdlq
    evealrngywivldelnlaptdvlealnrllddnrelfipqvlvkphpefmlfatqnpgr
    khlsrafrnrfleihfeneletilhkrckpsyaakivqvfrelslrratlrdlfrwafre
    avgyqqlaengymllaerardqkdklavqeviekvmskvvwtrpmirlfclvwrcllake
    pvllvcgkttvcqilaeclhkelhiinahgdiigaqrpvrrsavnyslhsqlcekfiddl
    iekfeklnlierqiikhdgalvtamkdfflldeisladdsvlerlnsvlelsrtltlavs
    ltakdgfaffatmnpggkkelspalrnrfteiwvptedilkivegklhnnkielarplve
    yakwhaneylytdvisirdvlsavefinaceildlnlvlfnavsmvfidallaslhaerq
    rcfaklnelahtdttlmnaskvlralqvlkpillegspgvgktslitalaretghqlvri
    nlsdqtdlmdlfgsdapflaamrnghwvlldelnlasqsvleglnacldhrneayipeld
    kvfhpnfrvfaaqnpqglprsfinrfsvvyvalkekdmieiaacnyhqvnedwrlkiikf
    mfrlqdniekdisgspwefnlrdtlrwlqllndadylevmvlhrmrtvedrvrtcelfke
    vfdidyeprtigfslssqcfkvghsllvrdqktlldsqnilqsqlpvlesvitcinkkwp
    cilvgdtatgktcilrllaaiagakikemavnsdtdtmdlidisrkaselftdlsqqlln
    ivikyrnfdifretslytlttsqaftllqkvvdqldetlvhslgdihekarkllaefsas
    paggyllkaveeghwfvldnanlcspavldrlnsllelivnekttedghpktikphpnfr
    lfltvnpvygelsramrnrgveifllkealteidkkqmsllepapissavdtlasnisyi
    kyvfetmgxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
    xxxxxxxxxpskrtyqvmisiddsksmsesgstvlaletlalvtkalsllevgqiavmkf
    geqpellhpfdkqfssesgvqmfshftfeqsntnvlaladasmkcfnyantashhrsnsd
    irqleiiisdgicedhdsirkllrraqeekvmivfvildnvntqkkssildikkvyydtk
    edgtmdlkiqpyidefafdyylvvrnieelpqllssalrqwfq