PDB entry 6edo

View 6edo on RCSB PDB site
Description: full-length s. pombe mdn1 in the presence of amppnp (ring region)
Deposited on 2018-08-09, released 2018-10-17
Made obsolete by 6or5 on 2019-05-29

The last revision was dated 2019-05-29, with a file datestamp of 2019-05-24.
Experiment type: EM
Resolution: 4 Å
R-factor: N/A
AEROSPACI score: 0 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Midasin
    Species: Schizosaccharomyces pombe (strain 972 / ATCC 24843) [TaxId:284812]
    Gene: mdn1, SPCC737.08
    Database cross-references and differences (RAF-indexed):
    • Uniprot O94248 (Start-2146)
    • PDB 6EDO (2147-2366)
  • Heterogens: ANP

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6edoA (A:)
    mdvliewvaiypqiydilehinyvpsntlqrlrlhqpwskidydvwflyasdeiretckv
    kyygetktygevfvlenerisqlhrlfvswtvseraehlknllfdaglsnlplvelggnv
    ffnshvplpcslvltkstqenlnritpylvqkrpillagpegigkkflitqiaaklgqqi
    irihlsdstdpkmligtytspkpgefewqpgvltqavitgkwilftniehapsevlsvll
    pllekrqlvipsrgetiyakgsfqmfatssmktkilgqrlwqildltyqpdecvevvstl
    ypvlsiicptlysvykdifdlfsqrsflatskiyrrlclrdfykfikrvaflyhkfmips
    dhvvisqelqdavfkeaidmfgafipsrdgfdlvvrnvaielnippekalqlrysipvfq
    nlehninigrcslkklstirscstnsyaftssslglleqlaagvqtneplllvgetgtgk
    tttiqllagllgqkvtvinmsqqtessdmlggykpinastlglplherfidifeqtfssk
    knakfismastsarrfrwktclkiwkeacklsktvldgqqplpnpqkrqkrlsnqvelrn
    qwakfekevedfekvltggsngfmfsfvegalvkavrsghwvlldeinlasletlepigq
    llssyesgillsergditpitphknfrlfgcmnpstdvgkrelepsfrsrfteiyvhspd
    qnlddllsiiqkyigslcignehvirevaelyqvakslsldgslvdgagqrphytvrtls
    rtlsyvteiapiyglrrslyegfcmsfltlldhtsesllynhvvrftlgelnrdqqnail
    kqipkvpdhssyiafchywlrrgsfpveeqehyiitpfvqknllniaracstrmfpiliq
    gptssgktsmieyvakktghkfvrinnhehtdlqeyigtyvtddngslsfregvlvealr
    ngywivldelnlaptdvlealnrllddnrelfipetqvlvkphpefmlfatqnppgvyag
    rkhlsrafrnrfleihfddipeneletilhkrckiapsyaakivqvfrelslrrqttrif
    eqknsfatlrdlfrwafreavgyqqlaengymllaerardqkdklavqeviekvmkvkid
    tdgiynldsmeifqdmslkegplskvvwtrpmirlfclvwrcllakepvllvgdtgcgkt
    tvcqilaeclhkelhiinahqdtengdiigaqrpvrnrsavnyslhsqlcekfnvqesld
    siddliekfeklsssekndnlsnlierqiikyrslfewhdgalvtamkqgdfflldeisl
    addsvlerlnsvlelsrtltlvehsnaavsltakdgfaffatmnpggdygkkelspalrn
    rfteiwvppmvdtedilkivegklhnnkielarplveyakwhaneylytdvisirdvlsa
    vefinaceildlnlvlfnavsmvfidalgsfttfslsnnlaslhaerqrcfaklnelags
    nimasksadisikfsdssffigdfgiplgdsvesdstyslhtdttlmnaskvlralqvlk
    pillegspgvgktslitalaretghqlvrinlsdqtdlmdlfgsdvpveggeggqfawrd
    apflaamrnghwvlldelnlasqsvleglnacldhrneayipeldkvfkahpnfrvfaaq
    npqhqgggrkglprsfinrfsvvyvealkekdmieiaacnyhqvnedwrlkiikfmfrlq
    dniekdisfgsfgspwefnlrdtlrwlqllndapkytcvspadylevmvlhrmrtvedrv
    rtcelfkevfdidyeprtigfslssqcfkvghsllvrdverqktlldsqnilqsqlpvle
    svitcinkkwpcilvgdtatgktcilrllaaiagakikemavnsdtdtmdligeyeqidi
    srkaselftdlsqqllnivikyrnfdnifretslytltttsfkthsqaftllqkvvdqld
    qlkihetlvhslgdihekarkllaefsaspagrfewfdgyllkaveeghwfvldnanlcs
    pavldrlnsllehkgvlivnekttedghpktikphpnfrlfltvnpvygelsramrnrgv
    eifllkealteidkkqmsllepapissavdtlasnisyikyvfetmgxxxxxxxxxxxxx
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    Sequence, based on observed residues (ATOM records):
    >6edoA (A:)
    dvliewvaiypqiydilehinyvpsntlqrlrlhqpwskidydvwflyasdeiretckvk
    yygetktygevfvlenerisqlhrlfvseraehlknllfdalplvelggnvffnshvplp
    cslvltkstqenlnritpylvqkrpillagpegigkkflitqiaaklgqqiirihlsdst
    dpkmligtytwqpgvltqavitgwilftniehevlsvllpllekrqlvipsrgetiyakg
    sfqmfatssmktkilgqrlwqildltyqpdecvevvstlypvlsiicptlysvykdifdl
    fsskiyrrlclrdfykfikrvaflyhkvfkeaidmfgafipsrdgfdlvvrnvaielnip
    pekalqlpvfqnlehninigrcslkklstirnsyaftssslglleqlaagvqtneplllv
    getgtgktttiqllagllgqkvtvinmsqqtessdmlgstlglplherfidifeqtfssk
    knakfismastsarrfrwktclkiwkeacklsktvlnqvelrnqwakfekevedfekvlt
    vegalvkavrsghwvlldeinlasletlepigqllsphknfrlfgcmnpepsfrsrftei
    yvhspdqnlddllsiiqkyigsnehvirevaelyqvakslsldphytvrtlsrtlsyvte
    iapiyglrrslyegfcmsfltlldhtsesllynhvvrftlnrdqqnailkqipkvpdyia
    fchywlrrgpveeqehyiitpfvqknllniaracstrmpiliqgptssgktsmieyvakk
    tghkfvrinnhehtdlqeyigtyvtddngslsfregvlvealrngywivldelnlaptdv
    lealnrllddnrelfipqvlvkphpefmlfatqnpgrkhlsrafrnrfleihfddipene
    letilhkrckiapsyaakivqvfrelslrrnsfatlrdlfrwafreavgyqqlaengyml
    laerardqkdklavqeviekvmskvvwtrpmirlfclvwrcllakepvllvgdtgcgktt
    vcqilaeclhkelhiinahtengdiigaqrpvrnrsavnyslhsqlcekfnviddliekf
    eklnlierqiikhdgalvtamkqdfflldeisladdsvlerlnsvlelsrtltlavslta
    kdgfaffatmnpggkkelspalrnrfteiwvptedilkivegklhnnkielarplveyak
    whaneylytdvisirdvlsavefinaceildlnlvlfnavsmvfidallaslhaerqrcf
    aklnelahtdttlmnaskvlralqvlkpillegspgvgktslitalaretghqlvrinls
    dqtdlmdlfgsdvpveapflaamrnghwvlldelnlasqsvleglnacldhrneayipel
    dkvfhpnfrvfaaqnpqglprsfinrfsvvyvealkekdmieiaacnyhqvnedwrlkii
    kfmfrlqdniekdisgspwefnlrdtlrwlqllndaadylevmvlhrmrtvedrvrtcel
    fkevfdidyeprtigfslssqcfkvghsllvrdqktlldsqnilqsqlpvlesvitcink
    kwpcilvgdtatgktcilrllaaiagakikemavnsdtdtmdlidisrkaselftdlsqq
    llnivikyrnfdifretslytlttsqaftllqkvvdqldetlvhslgdihekarkllaef
    saspaggyllkaveeghwfvldnanlcspavldrlnsllelivnekttedghpktikphp
    nfrlfltvnpvygelsramrnrgveifllkealteidkkqmsllepapissavdtlasni
    syikyvfetmgxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
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