PDB entry 6edb

View 6edb on RCSB PDB site
Description: crystal structure of sry.hcgas-21bp dsdna complex
Deposited on 2018-08-09, released 2019-05-29
The last revision was dated 2019-06-26, with a file datestamp of 2019-06-21.
Experiment type: XRAY
Resolution: 3.21 Å
R-factor: N/A
AEROSPACI score: 0.11 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Sex-determining region Y protein,Cyclic GMP-AMP synthase
    Species: Homo sapiens [TaxId:9606]
    Gene: CGAS, C6orf150, MB21D1
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Sex-determining region Y protein,Cyclic GMP-AMP synthase
    Species: Homo sapiens [TaxId:9606]
    Gene: CGAS, C6orf150, MB21D1
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: DNA (5'-d(*cp*gp*ap*tp*cp*cp*gp*gp*gp*ap*tp*cp*tp*ap*ap*ap*cp*ap*ap*tp*g)-3')
    Species: HOMO SAPIENS, synthetic [TaxId:9606]
  • Chain 'D':
    Compound: DNA (5'-d(*gp*cp*ap*tp*tp*gp*tp*tp*tp*ap*gp*ap*tp*cp*cp*cp*gp*gp*ap*tp*c)-3')
    Species: HOMO SAPIENS, synthetic [TaxId:9606]
  • Heterogens: ZN

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6edbA (A:)
svqdrvkrpmnafivwsrdqrrkmalenprmrnseiskqlgyqwkmlteaekwpffqeaq
klqamhrekypnykyrkgetkkkfkdpnadaapgasklravleklklsrddistaagmvk
gvvdhlllrlkcdsafrgvgllntgsyyehvkisapnefdvmfklevpriqleeysntra
yyfvkfkrnpkenplsqflegeilsaskmlskfrkiikeeindikdtdvimkrkrggspa
vtllisekisvditlalesksswpastqeglriqnwlsakvrkqlrlkpfylvpkhakeg
ngfqeetwrlsfshiekeilnnhgksktccenkeekccrkdclklmkylleqlkerfkdk
khldkfssyhvktaffhvctqnpqdsqwdrkdlglcfdncvtyflqclrteklenyfipe
fnlfssnlidkrskefltkqieyernnefpvfdef

    Sequence, based on observed residues (ATOM records):
    >6edbA (A:)
klravleklklsrddistaagmvkgvvdhlllrlkcdsafrgvgllntgsyyehvkisap
nefdvmfklevpriqleeysntrayyfvkfkrnpkenplsqflegeilsaskmlskfrki
ikeeindikdtdvimkrkrggspavtllisekisvditlalesksswpastqeglriqnw
lsakvrkqlrlkpfylvpkhakegngfqeetwrlsfshiekeilnnhgksktccenkeek
ccrkdclklmkylleqlkerfkdkkhldkfssyhvktaffhvctqnpqdsqwdrkdlglc
fdncvtyflqclrteklenyfipefnlfssnlidkrskefltkqieyernnefpvfd

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6edbB (B:)
svqdrvkrpmnafivwsrdqrrkmalenprmrnseiskqlgyqwkmlteaekwpffqeaq
klqamhrekypnykyrkgetkkkfkdpnadaapgasklravleklklsrddistaagmvk
gvvdhlllrlkcdsafrgvgllntgsyyehvkisapnefdvmfklevpriqleeysntra
yyfvkfkrnpkenplsqflegeilsaskmlskfrkiikeeindikdtdvimkrkrggspa
vtllisekisvditlalesksswpastqeglriqnwlsakvrkqlrlkpfylvpkhakeg
ngfqeetwrlsfshiekeilnnhgksktccenkeekccrkdclklmkylleqlkerfkdk
khldkfssyhvktaffhvctqnpqdsqwdrkdlglcfdncvtyflqclrteklenyfipe
fnlfssnlidkrskefltkqieyernnefpvfdef

    Sequence, based on observed residues (ATOM records):
    >6edbB (B:)
krpmnafivwsrdqrrkmalenprmrnseiskqlgyqwkmlteaekwpffqeaqklqamh
rekypny

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    No sequence available.