PDB entry 6dxs
View 6dxs on RCSB PDB site
Description: Crystal structure of the LigJ hydratase E284Q mutant substrate complex with (3Z)-2-keto-4-carboxy-3-hexenedioate
Class: lyase/lyase inhibitor
Keywords: Hydratase, amidohydrolase, LYASE, lyase-lyase inhibitor complex
Deposited on
2018-06-29, released
2018-09-26
The last revision prior to the SCOPe 2.08 freeze date was dated
2018-10-17, with a file datestamp of
2018-10-12.
Experiment type: XRAY
Resolution: 1.65 Å
R-factor: N/A
AEROSPACI score: 0.41
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: 4-oxalomesaconate hydratase
Species: Sphingobium sp. SYK-6 [TaxId:627192]
Gene: ligJ, SLG_12520
Database cross-references and differences (RAF-indexed):
- Uniprot G2IQQ5 (0-339)
- engineered mutation (282)
- expression tag (340-341)
Domains in SCOPe 2.08: d6dxsa1, d6dxsa2 - Chain 'B':
Compound: 4-oxalomesaconate hydratase
Species: Sphingobium sp. SYK-6 [TaxId:627192]
Gene: ligJ, SLG_12520
Database cross-references and differences (RAF-indexed):
- Uniprot G2IQQ5 (0-339)
- engineered mutation (282)
- expression tag (340-341)
Domains in SCOPe 2.08: d6dxsb1, d6dxsb2 - Chain 'C':
Compound: 4-oxalomesaconate hydratase
Species: Sphingobium sp. SYK-6 [TaxId:627192]
Gene: ligJ, SLG_12520
Database cross-references and differences (RAF-indexed):
- Uniprot G2IQQ5 (0-339)
- engineered mutation (282)
- expression tag (340-341)
Domains in SCOPe 2.08: d6dxsc1, d6dxsc2 - Chain 'D':
Compound: 4-oxalomesaconate hydratase
Species: Sphingobium sp. SYK-6 [TaxId:627192]
Gene: ligJ, SLG_12520
Database cross-references and differences (RAF-indexed):
- Uniprot G2IQQ5 (0-339)
- engineered mutation (282)
- expression tag (340-341)
Domains in SCOPe 2.08: d6dxsd1, d6dxsd2 - Heterogens: ZN, HJ7, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence; same for both SEQRES and ATOM records: (download)
>6dxsA (A:)
mmiidchghytvlpkahdewreqqkaafkagqpappypeisddeiretieanqlrliker
gadmtifsprasamaphvgdqsvavpwaqacnnliarvvdlfpetfagvcmlpqspeadm
tssiaelercvnelgfigcnlnpdpggghfkhppltdrfwypfyekmveldvpamihvsg
scnpamhatgayylaadtiafmqllqgnlfadfptlrfiiphgggavpyhwgrfrgladm
lkqpsldtllmnnvffdtcvyhqpginlladvidnknilfgsqmvgavrgidpttghyfd
dtkryidaldisdqerhaifegntrrvfprldaklkarglle
- Chain 'B':
Sequence; same for both SEQRES and ATOM records: (download)
>6dxsB (B:)
mmiidchghytvlpkahdewreqqkaafkagqpappypeisddeiretieanqlrliker
gadmtifsprasamaphvgdqsvavpwaqacnnliarvvdlfpetfagvcmlpqspeadm
tssiaelercvnelgfigcnlnpdpggghfkhppltdrfwypfyekmveldvpamihvsg
scnpamhatgayylaadtiafmqllqgnlfadfptlrfiiphgggavpyhwgrfrgladm
lkqpsldtllmnnvffdtcvyhqpginlladvidnknilfgsqmvgavrgidpttghyfd
dtkryidaldisdqerhaifegntrrvfprldaklkarglle
- Chain 'C':
Sequence; same for both SEQRES and ATOM records: (download)
>6dxsC (C:)
mmiidchghytvlpkahdewreqqkaafkagqpappypeisddeiretieanqlrliker
gadmtifsprasamaphvgdqsvavpwaqacnnliarvvdlfpetfagvcmlpqspeadm
tssiaelercvnelgfigcnlnpdpggghfkhppltdrfwypfyekmveldvpamihvsg
scnpamhatgayylaadtiafmqllqgnlfadfptlrfiiphgggavpyhwgrfrgladm
lkqpsldtllmnnvffdtcvyhqpginlladvidnknilfgsqmvgavrgidpttghyfd
dtkryidaldisdqerhaifegntrrvfprldaklkarglle
- Chain 'D':
Sequence; same for both SEQRES and ATOM records: (download)
>6dxsD (D:)
mmiidchghytvlpkahdewreqqkaafkagqpappypeisddeiretieanqlrliker
gadmtifsprasamaphvgdqsvavpwaqacnnliarvvdlfpetfagvcmlpqspeadm
tssiaelercvnelgfigcnlnpdpggghfkhppltdrfwypfyekmveldvpamihvsg
scnpamhatgayylaadtiafmqllqgnlfadfptlrfiiphgggavpyhwgrfrgladm
lkqpsldtllmnnvffdtcvyhqpginlladvidnknilfgsqmvgavrgidpttghyfd
dtkryidaldisdqerhaifegntrrvfprldaklkarglle