PDB entry 6dbf
View 6dbf on RCSB PDB site
Description: Crystal Structure of VHH R303 in complex with InlB-LRR
Class: immune system
Keywords: nanobody VHH Listeria Internalin, IMMUNE SYSTEM
Deposited on
2018-05-03, released
2018-07-18
The last revision prior to the SCOPe 2.08 freeze date was dated
2020-01-01, with a file datestamp of
2019-12-27.
Experiment type: XRAY
Resolution: 1.55 Å
R-factor: N/A
AEROSPACI score: 0.46
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Listeria virulence factor InlB
Species: Listeria monocytogenes [TaxId:1639]
Database cross-references and differences (RAF-indexed):
- Uniprot Q45GD4 (16-End)
- conflict (97)
- conflict (222)
Domains in SCOPe 2.08: d6dbfa_ - Chain 'B':
Compound: InlB specific VHH R303
Species: Camelus dromedarius [TaxId:9838]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d6dbfb_ - Heterogens: HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>6dbfA (A:)
mgshhhhhhenlyfqgetitvstpikqifpddafaetikdnlkkksvtdavtqnelnsid
qiiannsdiksvqgiqylpnvtklflngnkltdikplvnlknlgwlfldenkikdlsslk
dlkklkslslehngisdinglvhlpqleslylgnnkitditvlsrltkldtlslednqis
divplagltklqnlylsknhisdlralaglknldvlelfsqealnkpin
Sequence, based on observed residues (ATOM records): (download)
>6dbfA (A:)
etitvstpikqifpddafaetikdnlkkksvtdavtqnelnsidqiiannsdiksvqgiq
ylpnvtklflngnkltdikplvnlknlgwlfldenkikdlsslkdlkklkslslehngis
dinglvhlpqleslylgnnkitditvlsrltkldtlslednqisdivplagltklqnlyl
sknhisdlralaglknldvlelfsqeal
- Chain 'B':
Sequence, based on SEQRES records: (download)
>6dbfB (B:)
qvkleesgggsvqaggslrlscaasghtystycmgwfrqvpgkeregvarinvggsstwy
adsvrdrftisqdnakntvylqmnslkledtaiyyctlhrfcntwslgtlnvwgqgtqvt
vssgseqkliseedlnhhhhhh
Sequence, based on observed residues (ATOM records): (download)
>6dbfB (B:)
qvkleesgggsvqaggslrlscaasghtystycmgwfrqvkeregvarinvggsstwyad
svrdrftisqdnakntvylqmnslkledtaiyyctlhrfcntwslgtlnvwgqgtqvtvs
s