PDB entry 6d5k

View 6d5k on RCSB PDB site
Description: Structure of Human ATP:Cobalamin Adenosyltransferase bound to ATP, and Adenosylcobalamin
Class: transferase
Keywords: B12, metabolism, adenosyltransferase, TRANSFERASE
Deposited on 2018-04-19, released 2018-10-10
The last revision prior to the SCOPe 2.08 freeze date was dated 2019-12-25, with a file datestamp of 2019-12-20.
Experiment type: XRAY
Resolution: 2.85 Å
R-factor: N/A
AEROSPACI score: 0.16 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Cob(I)yrinic acid a,c-diamide adenosyltransferase, mitochondrial
    Species: Homo sapiens [TaxId:9606]
    Gene: MMAB
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6d5ka_
  • Chain 'B':
    Compound: Cob(I)yrinic acid a,c-diamide adenosyltransferase, mitochondrial
    Species: Homo sapiens [TaxId:9606]
    Gene: MMAB
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6d5kb_
  • Chain 'C':
    Compound: Cob(I)yrinic acid a,c-diamide adenosyltransferase, mitochondrial
    Species: Homo sapiens [TaxId:9606]
    Gene: MMAB
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6d5kc_
  • Heterogens: 5AD, ATP, B12, MG, SO4, EPE, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6d5kA (A:)
mpkiytktgdkgfsstftgerrpkddqvfeavgttdelssaigfalelvtekghtfaeel
qkiqctlqdvgsalatpcssareahlkyttfkagpileleqwidkytsqlppltafilps
ggkissalhfcravcrraerrvvplvqmgetdanvakflnrlsdylftlaryaamkegnq
ekiymkndpsaesegl

    Sequence, based on observed residues (ATOM records): (download) 
    >6d5kA (A:)
ddqvfeavgttdelssaigfalelvtekghtfaeelqkiqctlqdvgsalatkyttfkag
pileleqwidkytsqlppltafilpsggkissalhfcravcrraerrvvplvqmgetdan
vakflnrlsdylftlaryaamkegnqekiymk

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >6d5kB (B:)
mpkiytktgdkgfsstftgerrpkddqvfeavgttdelssaigfalelvtekghtfaeel
qkiqctlqdvgsalatpcssareahlkyttfkagpileleqwidkytsqlppltafilps
ggkissalhfcravcrraerrvvplvqmgetdanvakflnrlsdylftlaryaamkegnq
ekiymkndpsaesegl

    Sequence, based on observed residues (ATOM records): (download) 
    >6d5kB (B:)
kiytktgdkgfsstftgerrpkddqvfeavgttdelssaigfalelvtekghtfaeelqk
iqctlqdvgsalatpcssareahlkyttfkagpileleqwidkytsqlppltafilpsgg
kissalhfcravcrraerrvvplvqmgetdanvakflnrlsdylftlaryaamkegnqek
iy

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >6d5kC (C:)
mpkiytktgdkgfsstftgerrpkddqvfeavgttdelssaigfalelvtekghtfaeel
qkiqctlqdvgsalatpcssareahlkyttfkagpileleqwidkytsqlppltafilps
ggkissalhfcravcrraerrvvplvqmgetdanvakflnrlsdylftlaryaamkegnq
ekiymkndpsaesegl

    Sequence, based on observed residues (ATOM records): (download) 
    >6d5kC (C:)
dkgfsstftgerrpkddqvfeavgttdelssaigfalelvtekghtfaeelqkiqctlqd
vgsalatpcssareahlkyttfkagpileleqwidkytsqlppltafilpsggkissalh
fcravcrraerrvvplvqmgetdanvakflnrlsdylftlaryaamkegnqekiymkn