PDB entry 6d1d
View 6d1d on RCSB PDB site
Description: Crystal structure of NDM-1 complexed with compound 6
Class: HYDROLASE/HYDROLASE inhibitor
Keywords: beta-lactamase, carbapenemase, phosphonate, inhibitor, HYDROLASE, HYDROLASE-HYDROLASE inhibitor complex
Deposited on
2018-04-11, released
2019-04-17
The last revision prior to the SCOPe 2.08 freeze date was dated
2019-12-18, with a file datestamp of
2019-12-13.
Experiment type: XRAY
Resolution: 1.4 Å
R-factor: N/A
AEROSPACI score: 0.53
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Metallo-beta-lactamase type 2
Species: Klebsiella pneumoniae [TaxId:573]
Gene: blaNDM-1
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d6d1da_ - Heterogens: GTV, ZN, ACT, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>6d1dA (A:)
gshmgdqrfgdlvfrqlapnvwqhtsyldmpgfgavasnglivrdggrvlvvdtawtddq
taqilnwikqeinlpvalavvthahqdkmggmdalhaagiatyanalsnqlapqegmvaa
qhsltfaangwvepatapnfgplkvfypgpghtsdnitvgidgtdiafggclikdskaks
lgnlgdadtehyaasarafgaafpkasmivmshsapdsraaithtarmadklr
Sequence, based on observed residues (ATOM records): (download)
>6d1dA (A:)
gdqrfgdlvfrqlapnvwqhtsyldmpgfgavasnglivrdggrvlvvdtawtddqtaqi
lnwikqeinlpvalavvthahqdkmggmdalhaagiatyanalsnqlapqegmvaaqhsl
tfaangwvepatapnfgplkvfypgpghtsdnitvgidgtdiafggclikdskakslgnl
gdadtehyaasarafgaafpkasmivmshsapdsraaithtarmadklr