SCOPe 2.07: Structural Classification of Proteins

PDB entry 6cvm

View 6cvm on RCSB PDB site
Description: Atomic resolution cryo-EM structure of beta-galactosidase
Class: hydrolase
Keywords: drift correction, radiation damage, drug discovery, precision medicine, computer-aided drug discovery, HYDROLASE
Deposited on 2018-03-28, released 2018-05-30
The last revision prior to the SCOPe 2.07 freeze date was dated 2018-05-30, with a file datestamp of 2018-05-25.
Experiment type: EM
Resolution: 1.9 Å
R-factor: N/A
AEROSPACI score: 0.34 (click here for full SPACI score report)

Chains and heterogens:

Chain 'A':
Compound: beta-galactosidase
Species: Escherichia coli (strain K12) [TaxId:83333]
Database cross-references and differences (RAF-indexed):
- Uniprot P00722 (0-1020)
  - conflict (332)
  - conflict (869)
Domains in SCOPe 2.07: d6cvma1, d6cvma2, d6cvma3, d6cvma4, d6cvma5
Chain 'B':
Compound: beta-galactosidase
Species: Escherichia coli (strain K12) [TaxId:83333]
Database cross-references and differences (RAF-indexed):
- Uniprot P00722 (0-1020)
  - conflict (332)
  - conflict (869)
Domains in SCOPe 2.07: d6cvmb1, d6cvmb2, d6cvmb3, d6cvmb4, d6cvmb5
Chain 'C':
Compound: beta-galactosidase
Species: Escherichia coli (strain K12) [TaxId:83333]
Database cross-references and differences (RAF-indexed):
- Uniprot P00722 (0-1020)
  - conflict (332)
  - conflict (869)
Domains in SCOPe 2.07: d6cvmc1, d6cvmc2, d6cvmc3, d6cvmc4, d6cvmc5
Chain 'D':
Compound: beta-galactosidase
Species: Escherichia coli (strain K12) [TaxId:83333]
Database cross-references and differences (RAF-indexed):
- Uniprot P00722 (0-1020)
  - conflict (332)
  - conflict (869)
Domains in SCOPe 2.07: d6cvmd1, d6cvmd2, d6cvmd3, d6cvmd4, d6cvmd5
Heterogens: PTQ, MG, NA, HOH

PDB Chain Sequences:

Chain 'A':
Sequence; same for both SEQRES and ATOM records: (download)

>6cvmA (A:)
mitdslavvlqrrdwenpgvtqlnrlaahppfaswrnseeartdrpsqqlrslngewrfa
wfpapeavpeswlecdlpeadtvvvpsnwqmhgydapiytnvtypitvnppfvptenptg
cysltfnvdeswlqegqtriifdgvnsafhlwcngrwvgygqdsrlpsefdlsaflrage
nrlavmvlrwsdgsyledqdmwrmsgifrdvsllhkpttqisdfhvatrfnddfsravle
aevqmcgelrdylrvtvslwqgetqvasgtapfggeiiderggyadrvtlrlnvenpklw
saeipnlyravvelhtadgtlieaeacdvgfrvvriengllllngkpllirgvnrhehhp
lhgqvmdeqtmvqdillmkqnnfnavrcshypnhplwytlcdryglyvvdeaniethgmv
pmnrltddprwlpamservtrmvqrdrnhpsviiwslgnesghganhdalyrwiksvdps
rpvqyegggadttatdiicpmyarvdedqpfpavpkwsikkwlslpgetrplilceyaha
mgnslggfakywqafrqyprlqggfvwdwvdqslikydengnpwsayggdfgdtpndrqf
cmnglvfadrtphpalteakhqqqffqfrlsgqtievtseylfrhsdnellhwmvaldgk
plasgevpldvapqgkqlielpelpqpesagqlwltvrvvqpnatawseaghisawqqwr
laenlsvtlpaashaiphlttsemdfcielgnkrwqfnrqsgflsqmwigdkkqlltplr
dqftrapldndigvseatridpnawverwkaaghyqaeaallqctadtladavlittaha
wqhqgktlfisrktyridgsgqmaitvdvvvasdtphpariglncqlaqvaervnwlglg
pqenypdrltaacfdrwdlplsdmytpyvfpsenglrcgtrelnygphqwrgdfqfnisr
ysqqqlmetshrhllhaeegtwlnidgfhmgiggddswspsvsaefqlsagryhyqlvwc
q

Chain 'B':
Sequence; same for both SEQRES and ATOM records: (download)

>6cvmB (B:)
mitdslavvlqrrdwenpgvtqlnrlaahppfaswrnseeartdrpsqqlrslngewrfa
wfpapeavpeswlecdlpeadtvvvpsnwqmhgydapiytnvtypitvnppfvptenptg
cysltfnvdeswlqegqtriifdgvnsafhlwcngrwvgygqdsrlpsefdlsaflrage
nrlavmvlrwsdgsyledqdmwrmsgifrdvsllhkpttqisdfhvatrfnddfsravle
aevqmcgelrdylrvtvslwqgetqvasgtapfggeiiderggyadrvtlrlnvenpklw
saeipnlyravvelhtadgtlieaeacdvgfrvvriengllllngkpllirgvnrhehhp
lhgqvmdeqtmvqdillmkqnnfnavrcshypnhplwytlcdryglyvvdeaniethgmv
pmnrltddprwlpamservtrmvqrdrnhpsviiwslgnesghganhdalyrwiksvdps
rpvqyegggadttatdiicpmyarvdedqpfpavpkwsikkwlslpgetrplilceyaha
mgnslggfakywqafrqyprlqggfvwdwvdqslikydengnpwsayggdfgdtpndrqf
cmnglvfadrtphpalteakhqqqffqfrlsgqtievtseylfrhsdnellhwmvaldgk
plasgevpldvapqgkqlielpelpqpesagqlwltvrvvqpnatawseaghisawqqwr
laenlsvtlpaashaiphlttsemdfcielgnkrwqfnrqsgflsqmwigdkkqlltplr
dqftrapldndigvseatridpnawverwkaaghyqaeaallqctadtladavlittaha
wqhqgktlfisrktyridgsgqmaitvdvvvasdtphpariglncqlaqvaervnwlglg
pqenypdrltaacfdrwdlplsdmytpyvfpsenglrcgtrelnygphqwrgdfqfnisr
ysqqqlmetshrhllhaeegtwlnidgfhmgiggddswspsvsaefqlsagryhyqlvwc
q

Chain 'C':
Sequence; same for both SEQRES and ATOM records: (download)

>6cvmC (C:)
mitdslavvlqrrdwenpgvtqlnrlaahppfaswrnseeartdrpsqqlrslngewrfa
wfpapeavpeswlecdlpeadtvvvpsnwqmhgydapiytnvtypitvnppfvptenptg
cysltfnvdeswlqegqtriifdgvnsafhlwcngrwvgygqdsrlpsefdlsaflrage
nrlavmvlrwsdgsyledqdmwrmsgifrdvsllhkpttqisdfhvatrfnddfsravle
aevqmcgelrdylrvtvslwqgetqvasgtapfggeiiderggyadrvtlrlnvenpklw
saeipnlyravvelhtadgtlieaeacdvgfrvvriengllllngkpllirgvnrhehhp
lhgqvmdeqtmvqdillmkqnnfnavrcshypnhplwytlcdryglyvvdeaniethgmv
pmnrltddprwlpamservtrmvqrdrnhpsviiwslgnesghganhdalyrwiksvdps
rpvqyegggadttatdiicpmyarvdedqpfpavpkwsikkwlslpgetrplilceyaha
mgnslggfakywqafrqyprlqggfvwdwvdqslikydengnpwsayggdfgdtpndrqf
cmnglvfadrtphpalteakhqqqffqfrlsgqtievtseylfrhsdnellhwmvaldgk
plasgevpldvapqgkqlielpelpqpesagqlwltvrvvqpnatawseaghisawqqwr
laenlsvtlpaashaiphlttsemdfcielgnkrwqfnrqsgflsqmwigdkkqlltplr
dqftrapldndigvseatridpnawverwkaaghyqaeaallqctadtladavlittaha
wqhqgktlfisrktyridgsgqmaitvdvvvasdtphpariglncqlaqvaervnwlglg
pqenypdrltaacfdrwdlplsdmytpyvfpsenglrcgtrelnygphqwrgdfqfnisr
ysqqqlmetshrhllhaeegtwlnidgfhmgiggddswspsvsaefqlsagryhyqlvwc
q

Chain 'D':
Sequence; same for both SEQRES and ATOM records: (download)

>6cvmD (D:)
mitdslavvlqrrdwenpgvtqlnrlaahppfaswrnseeartdrpsqqlrslngewrfa
wfpapeavpeswlecdlpeadtvvvpsnwqmhgydapiytnvtypitvnppfvptenptg
cysltfnvdeswlqegqtriifdgvnsafhlwcngrwvgygqdsrlpsefdlsaflrage
nrlavmvlrwsdgsyledqdmwrmsgifrdvsllhkpttqisdfhvatrfnddfsravle
aevqmcgelrdylrvtvslwqgetqvasgtapfggeiiderggyadrvtlrlnvenpklw
saeipnlyravvelhtadgtlieaeacdvgfrvvriengllllngkpllirgvnrhehhp
lhgqvmdeqtmvqdillmkqnnfnavrcshypnhplwytlcdryglyvvdeaniethgmv
pmnrltddprwlpamservtrmvqrdrnhpsviiwslgnesghganhdalyrwiksvdps
rpvqyegggadttatdiicpmyarvdedqpfpavpkwsikkwlslpgetrplilceyaha
mgnslggfakywqafrqyprlqggfvwdwvdqslikydengnpwsayggdfgdtpndrqf
cmnglvfadrtphpalteakhqqqffqfrlsgqtievtseylfrhsdnellhwmvaldgk
plasgevpldvapqgkqlielpelpqpesagqlwltvrvvqpnatawseaghisawqqwr
laenlsvtlpaashaiphlttsemdfcielgnkrwqfnrqsgflsqmwigdkkqlltplr
dqftrapldndigvseatridpnawverwkaaghyqaeaallqctadtladavlittaha
wqhqgktlfisrktyridgsgqmaitvdvvvasdtphpariglncqlaqvaervnwlglg
pqenypdrltaacfdrwdlplsdmytpyvfpsenglrcgtrelnygphqwrgdfqfnisr
ysqqqlmetshrhllhaeegtwlnidgfhmgiggddswspsvsaefqlsagryhyqlvwc
q