PDB entry 6cvk

View 6cvk on RCSB PDB site
Description: Hepatitis B e-antigen in complex with scFv e13
Class: viral protein/immune system
Keywords: HEPATITIS B, SINGLE CHAIN VARIABLE FRAGMENT, E-ANTIGEN, VIRAL PROTEIN, VIRAL PROTEIN-IMMUNE SYSTEM complex
Deposited on 2018-03-28, released 2018-08-29
The last revision prior to the SCOPe 2.08 freeze date was dated 2019-12-11, with a file datestamp of 2019-12-06.
Experiment type: XRAY
Resolution: 2.38 Å
R-factor: N/A
AEROSPACI score: 0.23 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Single chain variable fragment (scFv) e13
    Species: Oryctolagus cuniculus [TaxId:9986]
    Database cross-references and differences (RAF-indexed):
    • PDB 6CVK
    Domains in SCOPe 2.08: d6cvka1, d6cvka2, d6cvka3
  • Chain 'B':
    Compound: Single chain variable fragment (scFv) e13
    Species: Oryctolagus cuniculus [TaxId:9986]
    Database cross-references and differences (RAF-indexed):
    • PDB 6CVK
    Domains in SCOPe 2.08: d6cvkb1, d6cvkb2, d6cvkb3
  • Chain 'C':
    Compound: capsid protein
    Species: Hepatitis B virus [TaxId:10407]
    Gene: C, PreC
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9QMH8 (0-End)
      • engineered mutation (57)
      • engineered mutation (73)
      • engineered mutation (102)
      • engineered mutation (116)
    Domains in SCOPe 2.08: d6cvkc_
  • Chain 'D':
    Compound: capsid protein
    Species: Hepatitis B virus [TaxId:10407]
    Gene: C, PreC
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9QMH8 (0-End)
      • engineered mutation (57)
      • engineered mutation (73)
      • engineered mutation (102)
      • engineered mutation (116)
    Domains in SCOPe 2.08: d6cvkd_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6cvkA (A:)
aaelvltqtpssvsaavggtvtincqasqsissrlgwyqqkpgqppklliygastltsgv
psrfkgsgsgteftltisgvqrddaatyyclgsdtstdtafgggtevvvkggssrssssg
gggsggggqeqlvesggrlvppggsltltctvsgidlssnaiswvrqapgkgleyigiiy
ggsipyysrwakgrftisktsttvalkmstltasdtatyfcargksdgdgyaayrldpwg
lgtlvtisslvprgshhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >6cvkA (A:)
aelvltqtpssvsaavggtvtincqasqsissrlgwyqqkpgqppklliygastltsgvp
srfkgsgsgteftltisgvqrddaatyyclgsdtstdtafgggtevvvkgqeqlvesggr
lvppggsltltctvsgidlssnaiswvrqapgkgleyigiiyggsipyysrwakgrftis
ktsttvalkmstltasdtatyfcargksdgdgyaayrldpwglgtlvtisslvprgshhh
h

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >6cvkB (B:)
aaelvltqtpssvsaavggtvtincqasqsissrlgwyqqkpgqppklliygastltsgv
psrfkgsgsgteftltisgvqrddaatyyclgsdtstdtafgggtevvvkggssrssssg
gggsggggqeqlvesggrlvppggsltltctvsgidlssnaiswvrqapgkgleyigiiy
ggsipyysrwakgrftisktsttvalkmstltasdtatyfcargksdgdgyaayrldpwg
lgtlvtisslvprgshhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >6cvkB (B:)
elvltqtpssvsaavggtvtincqasqsissrlgwyqqkpgqppklliygastltsgvps
rfkgsgsgteftltisgvqrddaatyyclgsdtstdtafgggtevvvkgeqlvesggrlv
ppggsltltctvsgidlssnaiswvrqapgkgleyigiiyggsipyysrwakgrftiskt
sttvalkmstltasdtatyfcargksdgdgyaayrldpwglgtlvtisslv

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >6cvkC (C:)
sklclgwlwgmdidpykefgatvellsflpsdffpsvrdlldtaaalyrdalespehasp
hhtalrqailcwgdlmtlatwvgtnledpasrdlvvsyvntnvglkfrqllwfhisaltf
gretvleylvsfgvwirtppayrppnapilstlpettvv

    Sequence, based on observed residues (ATOM records): (download) 
    >6cvkC (C:)
sklclgwlwgmdidpykefgatvellsflpsdffpsvrdlldtaaalyrdalespehasp
hhtalrqailcwgdlmtlatwvgtnledpasrdlvvsyvntnvglkfrqllwfhisaltf
gretvleylvsfgvwirtppayrppnapilstlp

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >6cvkD (D:)
sklclgwlwgmdidpykefgatvellsflpsdffpsvrdlldtaaalyrdalespehasp
hhtalrqailcwgdlmtlatwvgtnledpasrdlvvsyvntnvglkfrqllwfhisaltf
gretvleylvsfgvwirtppayrppnapilstlpettvv

    Sequence, based on observed residues (ATOM records): (download) 
    >6cvkD (D:)
sklclgwlwgmdidpykefgatvellsflpsdffpsvrdlldtaaalyrdalespehasp
hhtalrqailcwgdlmtlatwvgtnledpasrdlvvsyvntnvglkfrqllwfhisaltf
gretvleylvsfgvwirtppayrppnapilstlpe