PDB entry 6cex

View 6cex on RCSB PDB site
Description: Crystal structure of the A/Hong Kong/1/1968 (H3N2) influenza virus hemagglutinin in complex with small molecule N-Cyclohexyltaurine
Class: viral protein
Keywords: Glycoprotein, Ectodomain, N-glycosylation, VIRAL PROTEIN
Deposited on 2018-02-12, released 2018-04-04
The last revision prior to the SCOPe 2.07 freeze date was dated 2018-04-04, with a file datestamp of 2018-03-29.
Experiment type: XRAY
Resolution: 2.57 Å
R-factor: N/A
AEROSPACI score: 0.2 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Hemagglutinin
    Species: Influenza A virus (strain A/Hong Kong/1/1968 H3N2) [TaxId:506350]
    Gene: HA
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q91MA7 (4-End)
      • expression tag (3)
    Domains in SCOPe 2.07: d6cexa1, d6cexa2
  • Chain 'B':
    Compound: Hemagglutinin
    Species: Influenza A virus (strain A/Northern Territory/60/1968 H3N2) [TaxId:384505]
    Gene: HA
    Database cross-references and differences (RAF-indexed):
    • Uniprot P03436 (0-End)
      • conflict (122)
    Domains in SCOPe 2.07: d6cexb_
  • Chain 'C':
    Compound: Hemagglutinin
    Species: Influenza A virus (strain A/Hong Kong/1/1968 H3N2) [TaxId:506350]
    Gene: HA
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q91MA7 (4-End)
      • expression tag (2-3)
    Domains in SCOPe 2.07: d6cexc1, d6cexc2
  • Chain 'D':
    Compound: Hemagglutinin
    Species: Influenza A virus (strain A/Northern Territory/60/1968 H3N2) [TaxId:384505]
    Gene: HA
    Database cross-references and differences (RAF-indexed):
    • Uniprot P03436 (0-End)
      • conflict (122)
    Domains in SCOPe 2.07: d6cexd_
  • Chain 'E':
    Compound: Hemagglutinin
    Species: Influenza A virus (strain A/Hong Kong/1/1968 H3N2) [TaxId:506350]
    Gene: HA
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q91MA7 (4-End)
      • expression tag (2-3)
    Domains in SCOPe 2.07: d6cexe1, d6cexe2
  • Chain 'F':
    Compound: Hemagglutinin
    Species: Influenza A virus (strain A/Northern Territory/60/1968 H3N2) [TaxId:384505]
    Gene: HA
    Database cross-references and differences (RAF-indexed):
    • Uniprot P03436 (0-End)
      • conflict (122)
    Domains in SCOPe 2.07: d6cexf_
  • Heterogens: NHE, NAG, BMA, SO4, GOL, MAN, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6cexA (A:)
adpgatlclghhavpngtlvktitddqievtnatelvqssstgkicnnphrildgidctl
idallgdphcdvfqnetwdlfverskafsncypydvpdyaslrslvassgtlefitegft
wtgvtqnggsnackrgpgsgffsrlnwltksgstypvlnvtmpnndnfdklyiwgvhhps
tnqeqtslyvqasgrvtvstrrsqqtiipnigsrpwvrglssrisiywtivkpgdvlvin
sngnliaprgyfkmrtgkssimrsdapidtcisecitpngsipndkpfqnvnkitygacp
kyvkqntlklatgmrnvpekqtr

    Sequence, based on observed residues (ATOM records): (download) 
    >6cexA (A:)
gatlclghhavpngtlvktitddqievtnatelvqssstgkicnnphrildgidctlida
llgdphcdvfqnetwdlfverskafsncypydvpdyaslrslvassgtlefitegftwtg
vtqnggsnackrgpgsgffsrlnwltksgstypvlnvtmpnndnfdklyiwgvhhpstnq
eqtslyvqasgrvtvstrrsqqtiipnigsrpwvrglssrisiywtivkpgdvlvinsng
nliaprgyfkmrtgkssimrsdapidtcisecitpngsipndkpfqnvnkitygacpkyv
kqntlklatgmrnvpek

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >6cexB (B:)
glfgaiagfiengwegmidgwygfrhqnsegtgqaadlkstqaaidqingklnrviektn
ekfhqiekefsevegriqdlekyvedtkidlwsynaellvalenqhtidltdsemnklfe
ktgrqlrenaedmgngcfkiyhkcdnaciesirngtydhdvyrdealnnrfqik

    Sequence, based on observed residues (ATOM records): (download) 
    >6cexB (B:)
glfgaiagfiengwegmidgwygfrhqnsegtgqaadlkstqaaidqingklnrviektn
ekfhqiekefsevegriqdlekyvedtkidlwsynaellvalenqhtidltdsemnklfe
ktgrqlrenaedmgngcfkiyhkcdnaciesirngtydhdvyrdealnnrf

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >6cexC (C:)
adpgatlclghhavpngtlvktitddqievtnatelvqssstgkicnnphrildgidctl
idallgdphcdvfqnetwdlfverskafsncypydvpdyaslrslvassgtlefitegft
wtgvtqnggsnackrgpgsgffsrlnwltksgstypvlnvtmpnndnfdklyiwgvhhps
tnqeqtslyvqasgrvtvstrrsqqtiipnigsrpwvrglssrisiywtivkpgdvlvin
sngnliaprgyfkmrtgkssimrsdapidtcisecitpngsipndkpfqnvnkitygacp
kyvkqntlklatgmrnvpekqtr

    Sequence, based on observed residues (ATOM records): (download) 
    >6cexC (C:)
pgatlclghhavpngtlvktitddqievtnatelvqssstgkicnnphrildgidctlid
allgdphcdvfqnetwdlfverskafsncypydvpdyaslrslvassgtlefitegftwt
gvtqnggsnackrgpgsgffsrlnwltksgstypvlnvtmpnndnfdklyiwgvhhpstn
qeqtslyvqasgrvtvstrrsqqtiipnigsrpwvrglssrisiywtivkpgdvlvinsn
gnliaprgyfkmrtgkssimrsdapidtcisecitpngsipndkpfqnvnkitygacpky
vkqntlklatgmrnvp

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >6cexD (D:)
glfgaiagfiengwegmidgwygfrhqnsegtgqaadlkstqaaidqingklnrviektn
ekfhqiekefsevegriqdlekyvedtkidlwsynaellvalenqhtidltdsemnklfe
ktgrqlrenaedmgngcfkiyhkcdnaciesirngtydhdvyrdealnnrfqik

    Sequence, based on observed residues (ATOM records): (download) 
    >6cexD (D:)
glfgaiagfiengwegmidgwygfrhqnsegtgqaadlkstqaaidqingklnrviektn
ekfhqiekefsevegriqdlekyvedtkidlwsynaellvalenqhtidltdsemnklfe
ktgrqlrenaedmgngcfkiyhkcdnaciesirngtydhdvyrdealnnrf

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >6cexE (E:)
adpgatlclghhavpngtlvktitddqievtnatelvqssstgkicnnphrildgidctl
idallgdphcdvfqnetwdlfverskafsncypydvpdyaslrslvassgtlefitegft
wtgvtqnggsnackrgpgsgffsrlnwltksgstypvlnvtmpnndnfdklyiwgvhhps
tnqeqtslyvqasgrvtvstrrsqqtiipnigsrpwvrglssrisiywtivkpgdvlvin
sngnliaprgyfkmrtgkssimrsdapidtcisecitpngsipndkpfqnvnkitygacp
kyvkqntlklatgmrnvpekqtr

    Sequence, based on observed residues (ATOM records): (download) 
    >6cexE (E:)
pgatlclghhavpngtlvktitddqievtnatelvqssstgkicnnphrildgidctlid
allgdphcdvfqnetwdlfverskafsncypydvpdyaslrslvassgtlefitegftwt
gvtqnggsnackrgpgsgffsrlnwltksgstypvlnvtmpnndnfdklyiwgvhhpstn
qeqtslyvqasgrvtvstrrsqqtiipnigsrpwvrglssrisiywtivkpgdvlvinsn
gnliaprgyfkmrtgkssimrsdapidtcisecitpngsipndkpfqnvnkitygacpky
vkqntlklatgmrnvpek

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >6cexF (F:)
glfgaiagfiengwegmidgwygfrhqnsegtgqaadlkstqaaidqingklnrviektn
ekfhqiekefsevegriqdlekyvedtkidlwsynaellvalenqhtidltdsemnklfe
ktgrqlrenaedmgngcfkiyhkcdnaciesirngtydhdvyrdealnnrfqik

    Sequence, based on observed residues (ATOM records): (download) 
    >6cexF (F:)
glfgaiagfiengwegmidgwygfrhqnsegtgqaadlkstqaaidqingklnrviektn
ekfhqiekefsevegriqdlekyvedtkidlwsynaellvalenqhtidltdsemnklfe
ktgrqlrenaedmgngcfkiyhkcdnaciesirngtydhdvyrdealnnrfq