PDB entry 6bni

View 6bni on RCSB PDB site
Description: Crystal Structure of Lysyl-tRNA Synthetase from Cryptosporidium parvum complexed with L-lysine and Adenosine
Class: ligase
Keywords: SSGCID, Lysine--tRNA ligase, Cryptosporidium parvum, ATP binding, aminoacylation, cladosporin, Structural Genomics, Seattle Structural Genomics Center for Infectious Disease, LIGASE
Deposited on 2017-11-16, released 2018-02-14
The last revision prior to the SCOPe 2.08 freeze date was dated 2018-02-14, with a file datestamp of 2018-02-09.
Experiment type: XRAY
Resolution: 1.85 Å
R-factor: N/A
AEROSPACI score: 0.36 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Lysine--tRNA ligase
    Species: Cryptosporidium parvum (strain Iowa II) [TaxId:353152]
    Gene: cgd4_2370
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q5CR27 (21-End)
      • expression tag (19-20)
    Domains in SCOPe 2.08: d6bnia1, d6bnia2, d6bnia3
  • Chain 'B':
    Compound: Lysine--tRNA ligase
    Species: Cryptosporidium parvum (strain Iowa II) [TaxId:353152]
    Gene: cgd4_2370
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q5CR27 (21-End)
      • expression tag (19-20)
    Domains in SCOPe 2.08: d6bnib1, d6bnib2, d6bnib3
  • Heterogens: LYS, ADN, SO4, EDO, NA, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6bniA (A:)
mahhhhhhmgtleaqtqgpgshytdnrykmmecikdagrpfyphkfkismslpayalkyg
nvengyidkdttlslsgrvtsirssssklifydifceeqkvqiianimehdistgefsvs
hseirrgdvvgftgfpgkskrgelslfsksvvllspcyhmlptaisglkdqevryrqryl
dlmlneesrkvfklrsraikyirnyfdrlgflevetpmlnmiyggaaarpfityhnelet
qlymriapelylkqlivggldkvyeigknfrnegidlthnpeftamefymayadyydlmd
lteelisglvleihgslkipyhpdgpegkcieidfttpwkrfsfveeiesglgeklkrpl
dsqenidfmvemcekheielphprtaaklldklaghfvetkctnpsfiidhpqtmsplak
whrekpemterfelfvlgkelcnaytelneplqqrkffeqqadakasgdveacpidetfc
lalehglpptggwglgidrlimfladknnikevilfpamrnvkqnaqhsnqhsgn

    Sequence, based on observed residues (ATOM records): (download) 
    >6bniA (A:)
gshytdnrykmmecikdagrpfyphkfkismslpayalkygnvengyidkdttlslsgrv
tsirssssklifydifceeqkvqiianimehdistgefsvshseirrgdvvgftgfpgks
krgelslfsksvvllspcyhmlptaisglkdqevryrqryldlmlneesrkvfklrsrai
kyirnyfdrlgflevetpmlnmiyggaaarpfityhneletqlymriapelylkqlivgg
ldkvyeigknfrnegidlthnpeftamefymayadyydlmdlteelisglvleihgslki
pyhpdgpegkcieidfttpwkrfsfveeiesglgeklkrpldsqenidfmvemcekheie
lphprtaaklldklaghfvetkctnpsfiidhpqtmsplakwhrekpemterfelfvlgk
elcnaytelneplqqrkffeqqadakasgdveacpidetfclalehglpptggwglgidr
limfladknnikevilfpamrn

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >6bniB (B:)
mahhhhhhmgtleaqtqgpgshytdnrykmmecikdagrpfyphkfkismslpayalkyg
nvengyidkdttlslsgrvtsirssssklifydifceeqkvqiianimehdistgefsvs
hseirrgdvvgftgfpgkskrgelslfsksvvllspcyhmlptaisglkdqevryrqryl
dlmlneesrkvfklrsraikyirnyfdrlgflevetpmlnmiyggaaarpfityhnelet
qlymriapelylkqlivggldkvyeigknfrnegidlthnpeftamefymayadyydlmd
lteelisglvleihgslkipyhpdgpegkcieidfttpwkrfsfveeiesglgeklkrpl
dsqenidfmvemcekheielphprtaaklldklaghfvetkctnpsfiidhpqtmsplak
whrekpemterfelfvlgkelcnaytelneplqqrkffeqqadakasgdveacpidetfc
lalehglpptggwglgidrlimfladknnikevilfpamrnvkqnaqhsnqhsgn

    Sequence, based on observed residues (ATOM records): (download) 
    >6bniB (B:)
gshytdnrykmmecikdagrpfyphkfkismslpayalkygnvengyidkdttlslsgrv
tsirssssklifydifceeqkvqiianimehdistgefsvshseirrgdvvgftgfpgks
krgelslfsksvvllspcyhmlptaidqevryrqryldlmlneesrkvfklrsraikyir
nyfdrlgflevetpmlnmiyggaaarpfityhneletqlymriapelylkqlivggldkv
yeigknfrnegidlthnpeftamefymayadyydlmdlteelisglvleihgslkipyhp
dgpegkcieidfttpwkrfsfveeiesglgeklkrpldsqenidfmvemcekheielphp
rtaaklldklaghfvetkctnpsfiidhpqtmsplakwhrekpemterfelfvlgkelcn
aytelneplqqrkffeqqadakasgdveacpidetfclalehglpptggwglgidrlimf
ladknnikevilfpamrnv