PDB entry 6be4

View 6be4 on RCSB PDB site
Description: Crystal structure of a polysaccharide-binding human Fab (F598) in complex with nona-N-acetyl-D-glucosamine (9NAc)
Class: immune system
Keywords: Immunoglobulin, human antibody, antigen binding fragment, poly-N-acetylglucosamine, oligosaccharide, complex, IMMUNE SYSTEM
Deposited on 2017-10-24, released 2018-02-21
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-07-29, with a file datestamp of 2020-07-04.
Experiment type: XRAY
Resolution: 1.9 Å
R-factor: N/A
AEROSPACI score: 0.4 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'H':
    Compound: Fab (F598) Heavy Chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6BE4 (0-End)
    Domains in SCOPe 2.08: d6be4h1, d6be4h2
  • Chain 'L':
    Compound: Fab(F598) Light Chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6BE4 (0-End)
    Domains in SCOPe 2.08: d6be4l1, d6be4l2
  • Heterogens: NAG, HOH

PDB Chain Sequences:

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >6be4H (H:)
qvqlqesgpglvkpsetlsltctvsggsisgyywswirqppgkglewigyihysrstnsn
palksrvtissdtsknqlslrlssvtaadtavyycardtyyydsgdyedafdiwgqgtmv
tvssastkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgvhtfpav
lqssglyslssvvtvpssslgtqtyicnvnhkpsntkvdkkaepksc

    Sequence, based on observed residues (ATOM records): (download) 
    >6be4H (H:)
qvqlqesgpglvkpsetlsltctvsggsisgyywswirqppgkglewigyihysrstnsn
palksrvtissdtsknqlslrlssvtaadtavyycardtyyydsgdyedafdiwgqgtmv
tvssastkgpsvfplapgtaalgclvkdyfpepvtvswnsgaltsgvhtfpavlqssgly
slssvvtvpssslgtqtyicnvnhkpsntkvdkkaep

  • Chain 'L':
    Sequence, based on SEQRES records: (download) 
    >6be4L (L:)
qlvltqspsasaslgasvkltctlssghsnyaiawhqqqpgkgprylmkvnrdgshirgd
gipdrfsgstsgaeryltisslqsedeadyycqtwgagirvfgggtkltvlgqpkaapsv
tlfppsseelqankatlvclisdfypgavtvawkadgspvkagvetttpskqsnnkyaas
sylsltpeqwkshrsyscqvthegstvektvaptecs

    Sequence, based on observed residues (ATOM records): (download) 
    >6be4L (L:)
qlvltqspsasaslgasvkltctlssghsnyaiawhqqqpgkgprylmkvnrdgshirgd
gipdrfsgstsgaeryltisslqsedeadyycqtwgagirvfgggtkltvlgqpkaapsv
tlfppsseelqankatlvclisdfypgavtvawkadgspvkagvetttpskqsnnkyaas
sylsltpeqwkshrsyscqvthegstvektvap