PDB entry 6b9z
View 6b9z on RCSB PDB site
Description: Trastuzumab Fab v3
Class: immune system
Keywords: monoclonal antibody, Fab, IMMUNE SYSTEM
Deposited on
2017-10-11, released
2018-09-05
The last revision prior to the SCOPe 2.08 freeze date was dated
2018-09-05, with a file datestamp of
2018-08-31.
Experiment type: XRAY
Resolution: 1.82 Å
R-factor: N/A
AEROSPACI score: 0.36
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Trastuzumab Fab light chain
Species: Homo sapiens [TaxId:9606]
Gene: IGKC
Database cross-references and differences (RAF-indexed):
- PDB 6B9Z (0-106)
- Uniprot P01834 (107-213)
Domains in SCOPe 2.08: d6b9za1, d6b9za2 - Chain 'B':
Compound: Trastuzumab Fab heavy chain
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- PDB 6B9Z (0-107)
- Uniprot S6B291 (108-End)
- engineered mutation (174)
- engineered mutation (216)
Domains in SCOPe 2.08: d6b9zb_ - Chain 'C':
Compound: immunoglobulin g binding protein a
Species: Staphylococcus aureus [TaxId:1280]
Gene: SPA
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d6b9zc1, d6b9zc2 - Chain 'E':
Compound: protein l
Species: Finegoldia magna [TaxId:1260]
Database cross-references and differences (RAF-indexed):
- Uniprot Q51918 (3-63)
- expression tag (1-2)
- engineered mutation (16)
- engineered mutation (37)
- engineered mutation (55-57)
Domains in SCOPe 2.08: d6b9ze1, d6b9ze2 - Heterogens: HOH
PDB Chain Sequences:
- Chain 'A':
Sequence; same for both SEQRES and ATOM records: (download)
>6b9zA (A:)
diqmtqspillsasvgdrvtitcrasqdvntavawyqqrtngsprlliysasflysgvps
rfsgsrsgtdftltisslqpedeadyycqqhyttpptfgagtkveikrtvaapsvfifpp
sdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsstlt
lskadyekhkvyacevthqglsspvtksfnrgec
- Chain 'B':
Sequence, based on SEQRES records: (download)
>6b9zB (B:)
evqlvesggglvqpggslrlscaasgfnikdtyihwvrqspgkglewvariyptngytry
adsvkgrftisadtskntaylqmnslraedtaiyycsrwggdgfyamdywgqgtlvtvss
astkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgvhtfpcvlqss
glyslssvvtvpssslgtqtyicnvnhkpsntkvdkkvepksc
Sequence, based on observed residues (ATOM records): (download)
>6b9zB (B:)
evqlvesggglvqpggslrlscaasgfnikdtyihwvrqspgkglewvariyptngytry
adsvkgrftisadtskntaylqmnslraedtaiyycsrwggdgfyamdywgqgtlvtvss
astkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgvhtfpcvlqss
glyslssvvtvpssslgtqtyicnvnhkpsntkvdkkvepk
- Chain 'C':
Sequence; same for both SEQRES and ATOM records: (download)
>6b9zC (C:)
gsynkdqqsafyeilnmpnlneaqrngfiqslkddpsqstnvlgeakklnesqa
- Chain 'E':
Sequence, based on SEQRES records: (download)
>6b9zE (E:)
gsevtikvnlifadgkiqtaefkgtfeeataeayryaallakvngeytadledggnhmni
kfag
Sequence, based on observed residues (ATOM records): (download)
>6b9zE (E:)
sevtikvnlifadgkiqtaefkgtfeeataeayryaallakvngeytadledggnhmnik
fag