PDB entry 6b8s

View 6b8s on RCSB PDB site
Description: Crystal Structure of Dihydroorotate Dehydrogenase from Helicobacter pylori with bound FMN
Class: oxidoreductase
Keywords: SSGCID, dihydroorotate dehydrogenase, Helicobacter pylori, FMN, flavin mononucleotide, Structural Genomics, Seattle Structural Genomics Center for Infectious Disease, OXIDOREDUCTASE
Deposited on 2017-10-09, released 2017-11-22
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-01-15, with a file datestamp of 2020-01-10.
Experiment type: XRAY
Resolution: 2.25 Å
R-factor: N/A
AEROSPACI score: 0.25 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Dihydroorotate dehydrogenase (quinone)
    Species: Helicobacter pylori (strain G27) [TaxId:563041]
    Gene: pyrD, HPG27_417
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6b8sa1, d6b8sa2
  • Chain 'B':
    Compound: Dihydroorotate dehydrogenase (quinone)
    Species: Helicobacter pylori (strain G27) [TaxId:563041]
    Gene: pyrD, HPG27_417
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6b8sb1, d6b8sb2
  • Heterogens: FMN, PGE, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6b8sA (A:)
mahhhhhhmlyplvkkylfsldaedahekvckilrtlskssflcslihsqwgyknpklen
eilglnfpnplglaagfdknasmlraliafgfgyleagtltneaqvgnerprlfrhieee
slqnamgfnnygavlgarsfnrfapyktpiginlgknkhieqahaledykavlnqclnig
dyytfnlsspntpnlrdlqnkafvnelfcmakemthkplflkiapdleiddmleivnsai
eagahgiiatnttidkslvfapkemgglsgkcltkksrevfkelakaffnksvlvsvggi
sdakeayerikmgasllqiysafiyngpnlcqnilkdlvkllqkdgflsvkeaigadlr

    Sequence, based on observed residues (ATOM records): (download) 
    >6b8sA (A:)
lyplvkkylfsldaedahekvckilrtlskssflcslihsqwgyknpkleneilglnfpn
plglaagfdknasmlraliafgfgyleagtltneaqvgnerprlfrhieeeslqnamgfn
nygavlgarsfnrfapyktpiginlgknkhieqahaledykavlnqclnigdyytfnlnk
afvnelfcmakemthkplflkiapdleiddmleivnsaieagahgiiatnttidkslvfa
pkemgglsgkcltkksrevfkelakaffnksvlvsvggisdakeayerikmgasllqiys
afiyngpnlcqnilkdlvkllqkdgflsvkeaiga

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >6b8sB (B:)
mahhhhhhmlyplvkkylfsldaedahekvckilrtlskssflcslihsqwgyknpklen
eilglnfpnplglaagfdknasmlraliafgfgyleagtltneaqvgnerprlfrhieee
slqnamgfnnygavlgarsfnrfapyktpiginlgknkhieqahaledykavlnqclnig
dyytfnlsspntpnlrdlqnkafvnelfcmakemthkplflkiapdleiddmleivnsai
eagahgiiatnttidkslvfapkemgglsgkcltkksrevfkelakaffnksvlvsvggi
sdakeayerikmgasllqiysafiyngpnlcqnilkdlvkllqkdgflsvkeaigadlr

    Sequence, based on observed residues (ATOM records): (download) 
    >6b8sB (B:)
lyplvkkylfsldaedahekvckilrtlskssflcslihsqwgyknpkleneilglnfpn
plglaagfdknasmlraliafgfgyleagtltneaqvgnerprlfrhieeeslqnamgfn
nygavlgarsfnrfapyktpiginlgknkhieqahaledykavlnqclnigdyytfnlqn
kafvnelfcmakemthkplflkiapdleiddmleivnsaieagahgiiatnttidkslvf
apkemgglsgkcltkksrevfkelakaffnksvlvsvggisdakeayerikmgasllqiy
safiyngpnlcqnilkdlvkllqkdgflsvkeaiga