PDB entry 6b7o

View 6b7o on RCSB PDB site
Description: Crystal structure of Legionella effector sdeD (lpg2509) H67A in complex with ADP-ribosylated Ubiquitin
Class: cell invasion
Keywords: Legionella, Ubiquitin, sdeD, ADPR-Ub, PR-Ub, Phosphodiesterase, CELL INVASION
Deposited on 2017-10-04, released 2018-04-18
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-01-01, with a file datestamp of 2019-12-27.
Experiment type: XRAY
Resolution: 1.85 Å
R-factor: N/A
AEROSPACI score: 0.36 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: SdeD (lpg2509) H67A
    Species: Legionella pneumophila [TaxId:446]
    Gene: lpg2509
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q5ZSK8 (2-End)
      • expression tag (0-1)
      • engineered mutation (67)
  • Chain 'B':
    Compound: Polyubiquitin-C
    Species: Homo sapiens [TaxId:9606]
    Gene: UBC
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6b7ob_
  • Chain 'C':
    Compound: Polyubiquitin-C
    Species: Homo sapiens [TaxId:9606]
    Gene: UBC
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6b7oc_
  • Heterogens: AR6, HOH

PDB Chain Sequences:

  • Chain 'A':
    No sequence available.

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download)
    >6b7oB (B:)
    mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
    iqkestlhlvlrlrgg
    

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download)
    >6b7oC (C:)
    mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
    iqkestlhlvlrlrgg