PDB entry 6amy

View 6amy on RCSB PDB site
Description: Crystal structure of a 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase from Acinetobacter baumannii
Class: transferase
Keywords: NIAID, structural genomics, dapD, hospital-derived bacterial infection, Seattle Structural Genomics Center for Infectious Disease, SSGCID, TRANSFERASE
Deposited on 2017-08-11, released 2017-09-06
The last revision prior to the SCOPe 2.08 freeze date was dated 2017-09-06, with a file datestamp of 2017-09-01.
Experiment type: XRAY
Resolution: 2.85 Å
R-factor: N/A
AEROSPACI score: 0.16 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase
    Species: ACINETOBACTER BAUMANNII [TaxId:470]
    Gene: dapD
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6amya_
  • Chain 'B':
    Compound: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase
    Species: ACINETOBACTER BAUMANNII [TaxId:470]
    Gene: dapD
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6amyb_
  • Chain 'C':
    Compound: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase
    Species: ACINETOBACTER BAUMANNII [TaxId:470]
    Gene: dapD
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6amyc_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6amyA (A:)
mahhhhhhmsqlstiieqafedranftaadcpseirqaveeaiagldngtlrvaekinge
wvvhqwlkkavllsfklndnkpiescdlrfydkvetkfsgwteeqfkaagvrvvppavar
rgsfqaknvvlmpsyvnigayvdegtmvdtwatvgscaqigknvhlsggvgiggvleplq
anptiiedncfigarseivegviveegsvismgvyigqstriydretgeihygrvpagsv
vvpgnlpsadgkyslyaaiivkkvdaqtraktslndllrad

    Sequence, based on observed residues (ATOM records): (download) 
    >6amyA (A:)
sqlstiieqafedranftaadcpseirqaveeaiagldngtlrvaekingewvvhqwlkk
avllsfklndnkpiescdlrfydkvetkfsgwteeqfkaagvrvvppavarrgsfqaknv
vlmpsyvnigayvdegtmvdtwatvgscaqigknvhlsggvgiggvleplqanptiiedn
cfigarseivegviveegsvismgvyigqstriydretgeihygrvpagsvvvpgnlpsa
dgkyslyaaiivkkvdaqtslndllr

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >6amyB (B:)
mahhhhhhmsqlstiieqafedranftaadcpseirqaveeaiagldngtlrvaekinge
wvvhqwlkkavllsfklndnkpiescdlrfydkvetkfsgwteeqfkaagvrvvppavar
rgsfqaknvvlmpsyvnigayvdegtmvdtwatvgscaqigknvhlsggvgiggvleplq
anptiiedncfigarseivegviveegsvismgvyigqstriydretgeihygrvpagsv
vvpgnlpsadgkyslyaaiivkkvdaqtraktslndllrad

    Sequence, based on observed residues (ATOM records): (download) 
    >6amyB (B:)
sqlstiieqafedranftaadcpseirqaveeaiagldngtlrvaekingewvvhqwlkk
avllsfklndnkpiescdlrfydkvetkfsgwteeqfkaagvrvvppavarrgsfqaknv
vlmpsyvnigayvdegtmvdtwatvgscaqigknvhlsggvgiggvleplqanptiiedn
cfigarseivegviveegsvismgvyigqstriydretgeihygrvpagsvvvpgnlpsa
dgkyslyaaiivkkvdaq

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >6amyC (C:)
mahhhhhhmsqlstiieqafedranftaadcpseirqaveeaiagldngtlrvaekinge
wvvhqwlkkavllsfklndnkpiescdlrfydkvetkfsgwteeqfkaagvrvvppavar
rgsfqaknvvlmpsyvnigayvdegtmvdtwatvgscaqigknvhlsggvgiggvleplq
anptiiedncfigarseivegviveegsvismgvyigqstriydretgeihygrvpagsv
vvpgnlpsadgkyslyaaiivkkvdaqtraktslndllrad

    Sequence, based on observed residues (ATOM records): (download) 
    >6amyC (C:)
sqlstiieqafedranftaadcpseirqaveeaiagldngtlrvaekingewvvhqwlkk
avllsfklndnkpiescdlrfydkvetkfsgwteeqfkaagvrvvppavarrgsfqaknv
vlmpsyvnigayvdegtmvdtwatvgscaqigknvhlsggvgiggvleplqanptiiedn
cfigarseivegviveegsvismgvyigqstriydretgeihygrvpagsvvvpgnlpsa
dgkyslyaaiivkkvlndll