PDB entry 6afk

View 6afk on RCSB PDB site
Description: Crystal structure of TrmD from Pseudomonas aeruginosa in complex with active-site inhibitor
Class: transferase
Keywords: tRNA methyltransferase, TRANSFERASE
Deposited on 2018-08-08, released 2019-08-14
The last revision prior to the SCOPe 2.07 freeze date was dated 2019-08-14, with a file datestamp of 2019-08-09.
Experiment type: XRAY
Resolution: 2.75 Å
R-factor: N/A
AEROSPACI score: 0.17 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: tRNA (guanine-N(1)-)-methyltransferase
    Species: Pseudomonas aeruginosa UCBPP-PA14 [TaxId:208963]
    Gene: trmD
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q02RL6 (23-268)
      • expression tag (20-22)
    Domains in SCOPe 2.07: d6afka1, d6afka2
  • Chain 'B':
    Compound: tRNA (guanine-N(1)-)-methyltransferase
    Species: Pseudomonas aeruginosa UCBPP-PA14 [TaxId:208963]
    Gene: trmD
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q02RL6 (23-268)
      • expression tag (21-22)
    Domains in SCOPe 2.07: d6afkb1, d6afkb2
  • Heterogens: SAM, 9WO, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6afkA (A:)
mhhhhhhssgvdlgtenlyfqsmlwvgvvsifpemfraisdygitsravkqglltltcwn
prvytedrhqtvddrpfgggpgmvmkikplegaladarqaaggrkakviylspqgrqltq
agvrelaeeealiliagryegiderfieehvdeewsigdyvlsggelpamvlvdavtrll
pgalghadsaeedsftdglldcphytrpevyadkrvpevllsgnhehirrwrlqqalgrt
werradlldsrslsgeeqkllaeyirqrd

    Sequence, based on observed residues (ATOM records): (download) 
    >6afkA (A:)
qsmlwvgvvsifpemfraisdygitsravkqglltltcwnprvytedrhqtvddrpfggg
pgmvmkikplegaladarqaaggrkakviylspqgrqltqagvrelaeeealiliagrye
giderfieehvdeewsigdyvlsggelpamvlvdavtrllpgaldglldcphytrpevya
dkrvpevllsgnhehirrwrlqqalgrtwerradlldsrslsgeeqkllaeyirqrd

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >6afkB (B:)
mhhhhhhssgvdlgtenlyfqsmlwvgvvsifpemfraisdygitsravkqglltltcwn
prvytedrhqtvddrpfgggpgmvmkikplegaladarqaaggrkakviylspqgrqltq
agvrelaeeealiliagryegiderfieehvdeewsigdyvlsggelpamvlvdavtrll
pgalghadsaeedsftdglldcphytrpevyadkrvpevllsgnhehirrwrlqqalgrt
werradlldsrslsgeeqkllaeyirqrd

    Sequence, based on observed residues (ATOM records): (download) 
    >6afkB (B:)
smlwvgvvsifpemfraisdygitsravkqglltltcwnprvytedrhqtvddrpfgggp
gmvmkikplegaladarqaaggrkakviylspqgrqltqagvrelaeeealiliagryeg
iderfieehvdeewsigdyvlsggelpamvlvdavtrllpgaldsaeedsftdglldcph
ytrpevyadkrvpevllsgnhehirrwrlqqalgrtwerradlldsrslsgeeqkllaey
irqrd