PDB entry 5zv9

View 5zv9 on RCSB PDB site
Description: P domain of GII.13 norovirus capsid
Class: viral protein
Keywords: capsid, protruding domain, dimer, HBGA recognition, VIRAL PROTEIN
Deposited on 2018-05-09, released 2018-10-03
The last revision prior to the SCOPe 2.08 freeze date was dated 2019-04-17, with a file datestamp of 2019-04-12.
Experiment type: XRAY
Resolution: 1.8 Å
R-factor: N/A
AEROSPACI score: 0.37 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Major capsid protein VP1
    Species: Norovirus Hu/GII.13/10N4598/2010/NP [TaxId:1313163]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5zv9a_
  • Chain 'B':
    Compound: Major capsid protein VP1
    Species: Norovirus Hu/GII.13/10N4598/2010/NP [TaxId:1313163]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5zv9b_
  • Heterogens: GOL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5zv9A (A:)
sktkpftlpiltiseltnsrfpipieqlytapnennvvqcqngrctldgelqgttqllss
avcsyrgrtvansgdnwdqnllqltypsgasydptdevpaplgtqdfrgilygvltqdnv
segtgeaknakgvyisttsgkftpkigsiglhsitenvhpnqqsrftpvgvaqnentpfq
qwvlphyagalalntnlapavaptfpgeqllffrsrvpcvqglrgqdafidcllpqewvn
hfyqeaapsqadvaliryvnpdtgrtlfeaklhrsgfitvshtgayplvvppnghfrfds
wvnqfyslapmgtgngr

    Sequence, based on observed residues (ATOM records): (download) 
    >5zv9A (A:)
kpftlpiltiseltnsrfpipieqlytapnennvvqcqngrctldgelqgttqllssavc
syrgrtvansgdnwdqnllqltypsgasydptdevpaplgtqdfrgilygvltqdnvseg
tgeaknakgvyisttsgkftpkigsiglhsitenvhpnqqsrftpvgvaqnentpfqqwv
lphyagalalntnlapavaptfpgeqllffrsrvpcvqglrgqdafidcllpqewvnhfy
qeaapsqadvaliryvnpdtgrtlfeaklhrsgfitvshtgayplvvppnghfrfdswvn
qfyslapm

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >5zv9B (B:)
sktkpftlpiltiseltnsrfpipieqlytapnennvvqcqngrctldgelqgttqllss
avcsyrgrtvansgdnwdqnllqltypsgasydptdevpaplgtqdfrgilygvltqdnv
segtgeaknakgvyisttsgkftpkigsiglhsitenvhpnqqsrftpvgvaqnentpfq
qwvlphyagalalntnlapavaptfpgeqllffrsrvpcvqglrgqdafidcllpqewvn
hfyqeaapsqadvaliryvnpdtgrtlfeaklhrsgfitvshtgayplvvppnghfrfds
wvnqfyslapmgtgngr

    Sequence, based on observed residues (ATOM records): (download) 
    >5zv9B (B:)
tkpftlpiltiseltnsrfpipieqlytapnennvvqcqngrctldgelqgttqllssav
csyrgrtvansgdnwdqnllqltypsgasydptdevpaplgtqdfrgilygvltqdnvse
gtgeaknakgvyisttsgkftpkigsiglhsitenvhpnqqsrftpvgvaqnentpfqqw
vlphyagalalntnlapavaptfpgeqllffrsrvpcvqglrgqdafidcllpqewvnhf
yqeaapsqadvaliryvnpdtgrtlfeaklhrsgfitvshtgayplvvppnghfrfdswv
nqfyslapmgt