SCOPe 2.08: Structural Classification of Proteins

PDB entry 5zqx

View 5zqx on RCSB PDB site
Description: Crystal structure of beta-xylosidase mutant (E186Q) from Bacillus pumilus
Class: hydrolase
Keywords: xylobiose hydrolysis, HYDROLASE
Deposited on 2018-04-20, released 2018-05-30
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-07-29, with a file datestamp of 2020-07-02.
Experiment type: XRAY
Resolution: 2 Å
R-factor: N/A
AEROSPACI score: 0.39 (click here for full SPACI score report)

Chains and heterogens:

Chain 'A':
Compound: beta-xylosidase
Species: Bacillus pumilus [TaxId:1408]
Gene: xynB
Database cross-references and differences (RAF-indexed):
- Uniprot P07129 (0-534)
  - engineered mutation (185)
  - expression tag (535)
Domains in SCOPe 2.08: d5zqxa1, d5zqxa2, d5zqxa3
Chain 'B':
Compound: beta-xylosidase
Species: Bacillus pumilus [TaxId:1408]
Gene: xynB
Database cross-references and differences (RAF-indexed):
- Uniprot P07129 (0-End)
  - engineered mutation (185)
Domains in SCOPe 2.08: d5zqxb1, d5zqxb2
Chain 'C':
Compound: beta-xylosidase
Species: Bacillus pumilus [TaxId:1408]
Gene: xynB
Database cross-references and differences (RAF-indexed):
- Uniprot P07129 (0-534)
  - engineered mutation (185)
Domains in SCOPe 2.08: d5zqxc1, d5zqxc2, d5zqxc3
Chain 'D':
Compound: beta-xylosidase
Species: Bacillus pumilus [TaxId:1408]
Gene: xynB
Database cross-references and differences (RAF-indexed):
- Uniprot P07129 (0-End)
  - engineered mutation (185)
Domains in SCOPe 2.08: d5zqxd1, d5zqxd2
Heterogens: HOH

PDB Chain Sequences:

Chain 'A':
Sequence, based on SEQRES records: (download)

>5zqxA (A:)
mkitnpvlkgfnpdpsicragedyymavstfewfpgvqiyhskdlihwrlaarplqktsq
ldmkgnpdsggvwapclsyadgqfwliysdikvvdgpfkdghnylvtadavdgewsdpvr
lnssgfdpslfhdpsgkkyvlnmlwdhrekhhsfagialqeysvsekklvgerkvifkgt
pikltqaphlyyindvyylltaeggtryehaatiarssridgpyevhpdnpiltafhaps
hplqkcghasivqthtnewylahltgrpihsskesifqqrgwcplgretaiqklewkdgw
pyvvggkeglleveapamsvkefsptyhivdefkdsslnrhfqtlripftdqigsvtenp
hhlrlygqesltskftqafvarrwqsfyfeaetavsffpknfqqaaglvnyyntenwtal
qvtyddalgrilelsvcenlafsqplikkiiipdeipyvylkvtvqretytysysfdqqe
wekidvplesthlsddfirgggfftgafvgmqcqdtsgerlpadfkyfryeettehhhhh
h

Sequence, based on observed residues (ATOM records): (download)

>5zqxA (A:)
mkitnpvlkgfnpdpsicragedyymavstfewfpgvqiyhskdlihwrlaarplqktsq
ldmkgnpdsggvwapclsyadgqfwliysdikvvdgpfkdghnylvtadavdgewsdpvr
lnssgfdpslfhdpsgkkyvlnmlwdhrekhhsfagialqeysvsekklvgerkvifkgt
pikltqaphlyyindvyylltaeggtryehaatiarssridgpyevhpdnpiltafhaps
hplqkcghasivqthtnewylahltgrpihsskesifqqrgwcplgretaiqklewkdgw
pyvvggkeglleveapamsvkefsptyhivdefkdsslnrhfqtlripftdqigsvtenp
hhlrlygqesltskftqafvarrwqsfyfeaetavsffpknfqqaaglvnyyntenwtal
qvtyddalgrilelsvcenlafsqplikkiiipdeipyvylkvtvqretytysysfdqqe
wekidvplesthlsddfirgggfftgafvgmqcqdtsgerlpadfkyfryeetteh

Chain 'B':
Sequence, based on SEQRES records: (download)

>5zqxB (B:)
mkitnpvlkgfnpdpsicragedyymavstfewfpgvqiyhskdlihwrlaarplqktsq
ldmkgnpdsggvwapclsyadgqfwliysdikvvdgpfkdghnylvtadavdgewsdpvr
lnssgfdpslfhdpsgkkyvlnmlwdhrekhhsfagialqeysvsekklvgerkvifkgt
pikltqaphlyyindvyylltaeggtryehaatiarssridgpyevhpdnpiltafhaps
hplqkcghasivqthtnewylahltgrpihsskesifqqrgwcplgretaiqklewkdgw
pyvvggkeglleveapamsvkefsptyhivdefkdsslnrhfqtlripftdqigsvtenp
hhlrlygqesltskftqafvarrwqsfyfeaetavsffpknfqqaaglvnyyntenwtal
qvtyddalgrilelsvcenlafsqplikkiiipdeipyvylkvtvqretytysysfdqqe
wekidvplesthlsddfirgggfftgafvgmqcqdtsgerlpadfkyfryeettehhhhh
h

Sequence, based on observed residues (ATOM records): (download)

>5zqxB (B:)
mkitnpvlkgfnpdpsicragedyymavstfewfpgvqiyhskdlihwrlaarplqktsq
ldmkgnpdsggvwapclsyadgqfwliysdikvvdgpfkdghnylvtadavdgewsdpvr
lnssgfdpslfhdpsgkkyvlnmlwdhrekhhsfagialqeysvsekklvgerkvifkgt
pikltqaphlyyindvyylltaeggtryehaatiarssridgpyevhpdnpiltafhaps
hplqkcghasivqthtnewylahltgrpihsskesifqqrgwcplgretaiqklewkdgw
pyvvggkeglleveapamsvkefsptyhivdefkdsslnrhfqtlripftdqigsvtenp
hhlrlygqesltskftqafvarrwqsfyfeaetavsffpknfqqaaglvnyyntenwtal
qvtyddalgrilelsvcenlafsqplikkiiipdeipyvylkvtvqretytysysfdqqe
wekidvplesthlsddfirgggfftgafvgmqcqdtsgerlpadfkyfryeet

Chain 'C':
Sequence, based on SEQRES records: (download)

>5zqxC (C:)
mkitnpvlkgfnpdpsicragedyymavstfewfpgvqiyhskdlihwrlaarplqktsq
ldmkgnpdsggvwapclsyadgqfwliysdikvvdgpfkdghnylvtadavdgewsdpvr
lnssgfdpslfhdpsgkkyvlnmlwdhrekhhsfagialqeysvsekklvgerkvifkgt
pikltqaphlyyindvyylltaeggtryehaatiarssridgpyevhpdnpiltafhaps
hplqkcghasivqthtnewylahltgrpihsskesifqqrgwcplgretaiqklewkdgw
pyvvggkeglleveapamsvkefsptyhivdefkdsslnrhfqtlripftdqigsvtenp
hhlrlygqesltskftqafvarrwqsfyfeaetavsffpknfqqaaglvnyyntenwtal
qvtyddalgrilelsvcenlafsqplikkiiipdeipyvylkvtvqretytysysfdqqe
wekidvplesthlsddfirgggfftgafvgmqcqdtsgerlpadfkyfryeettehhhhh
h

Sequence, based on observed residues (ATOM records): (download)

>5zqxC (C:)
mkitnpvlkgfnpdpsicragedyymavstfewfpgvqiyhskdlihwrlaarplqktsq
ldmkgnpdsggvwapclsyadgqfwliysdikvvdgpfkdghnylvtadavdgewsdpvr
lnssgfdpslfhdpsgkkyvlnmlwdhrekhhsfagialqeysvsekklvgerkvifkgt
pikltqaphlyyindvyylltaeggtryehaatiarssridgpyevhpdnpiltafhaps
hplqkcghasivqthtnewylahltgrpihsskesifqqrgwcplgretaiqklewkdgw
pyvvggkeglleveapamsvkefsptyhivdefkdsslnrhfqtlripftdqigsvtenp
hhlrlygqesltskftqafvarrwqsfyfeaetavsffpknfqqaaglvnyyntenwtal
qvtyddalgrilelsvcenlafsqplikkiiipdeipyvylkvtvqretytysysfdqqe
wekidvplesthlsddfirgggfftgafvgmqcqdtsgerlpadfkyfryeette

Chain 'D':
Sequence, based on SEQRES records: (download)

>5zqxD (D:)
mkitnpvlkgfnpdpsicragedyymavstfewfpgvqiyhskdlihwrlaarplqktsq
ldmkgnpdsggvwapclsyadgqfwliysdikvvdgpfkdghnylvtadavdgewsdpvr
lnssgfdpslfhdpsgkkyvlnmlwdhrekhhsfagialqeysvsekklvgerkvifkgt
pikltqaphlyyindvyylltaeggtryehaatiarssridgpyevhpdnpiltafhaps
hplqkcghasivqthtnewylahltgrpihsskesifqqrgwcplgretaiqklewkdgw
pyvvggkeglleveapamsvkefsptyhivdefkdsslnrhfqtlripftdqigsvtenp
hhlrlygqesltskftqafvarrwqsfyfeaetavsffpknfqqaaglvnyyntenwtal
qvtyddalgrilelsvcenlafsqplikkiiipdeipyvylkvtvqretytysysfdqqe
wekidvplesthlsddfirgggfftgafvgmqcqdtsgerlpadfkyfryeettehhhhh
h

Sequence, based on observed residues (ATOM records): (download)

>5zqxD (D:)
mkitnpvlkgfnpdpsicragedyymavstfewfpgvqiyhskdlihwrlaarplqktsq
ldmkgnpdsggvwapclsyadgqfwliysdikvvdgpfkdghnylvtadavdgewsdpvr
lnssgfdpslfhdpsgkkyvlnmlwdhrekhhsfagialqeysvsekklvgerkvifkgt
pikltqaphlyyindvyylltaeggtryehaatiarssridgpyevhpdnpiltafhaps
hplqkcghasivqthtnewylahltgrpihsskesifqqrgwcplgretaiqklewkdgw
pyvvggkeglleveapamsvkefsptyhivdefkdsslnrhfqtlripftdqigsvtenp
hhlrlygqesltskftqafvarrwqsfyfeaetavsffpknfqqaaglvnyyntenwtal
qvtyddalgrilelsvcenlafsqplikkiiipdeipyvylkvtvqretytysysfdqqe
wekidvplesthlsddfirgggfftgafvgmqcqdtsgerlpadfkyfryeet