PDB entry 5zqc

View 5zqc on RCSB PDB site
Description: Crystal Structure of Penicillin-Binding Protein D2 from Listeria monocytogenes in the Ampicillin bound form
Class: antibiotic
Keywords: Listeria monocytogenes, hypothetical, penicillin-binding protein, LmPBPD2, lmo2812, ANTIBIOTIC
Deposited on 2018-04-18, released 2018-08-01
The last revision prior to the SCOPe 2.07 freeze date was dated 2018-08-01, with a file datestamp of 2018-07-27.
Experiment type: XRAY
Resolution: 1.7 Å
R-factor: N/A
AEROSPACI score: 0.4 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Lmo2812 protein
    Species: Listeria monocytogenes EGD-e [TaxId:169963]
    Gene: lmo2812
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5zqca_
  • Chain 'B':
    Compound: Lmo2812 protein
    Species: Listeria monocytogenes EGD-e [TaxId:169963]
    Gene: lmo2812
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5zqcb_
  • Chain 'C':
    Compound: Lmo2812 protein
    Species: Listeria monocytogenes EGD-e [TaxId:169963]
    Gene: lmo2812
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5zqcc_
  • Chain 'D':
    Compound: Lmo2812 protein
    Species: Listeria monocytogenes EGD-e [TaxId:169963]
    Gene: lmo2812
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d5zqcd_
  • Heterogens: AIX, GOL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >5zqcA (A:)
    hhhhhhdydipttenlyfqgamgssteqpnlylsanaaavysvengealyeqnadkvmpi
    aslsklmtaflvleavdnnelswdekldlvrlddpsavslyaitqkrtwsvrdlysamlt
    msandaaetlgdrldgadfpkemnnqakklgmsskttfvsasgldvdgksavsttkdlfl
    lssklisthpevlettskptvttdkgaklestndllgsiqgldglktgftdeagycfigt
    aerggkrvisivldagtaekrfkdteklmevgfked
    

    Sequence, based on observed residues (ATOM records): (download)
    >5zqcA (A:)
    qpnlylsanaaavysvengealyeqnadkvmpiaslsklmtaflvleavdnnelswdekl
    dlvrldavslyaitqkrtwsvrdlysamltmsandaaetlgdrldgadfpkemnnqakkl
    gmsskttfvsasgldvdgksavsttkdlfllssklisthpevlettskptvttdkgakle
    stndllgsiqgldglktgftdeagycfigtaerggkrvisivldagtaekrfkdteklme
    vgfk
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >5zqcB (B:)
    hhhhhhdydipttenlyfqgamgssteqpnlylsanaaavysvengealyeqnadkvmpi
    aslsklmtaflvleavdnnelswdekldlvrlddpsavslyaitqkrtwsvrdlysamlt
    msandaaetlgdrldgadfpkemnnqakklgmsskttfvsasgldvdgksavsttkdlfl
    lssklisthpevlettskptvttdkgaklestndllgsiqgldglktgftdeagycfigt
    aerggkrvisivldagtaekrfkdteklmevgfked
    

    Sequence, based on observed residues (ATOM records): (download)
    >5zqcB (B:)
    pnlylsanaaavysvengealyeqnadkvmpiaslsklmtaflvleavdnnelswdekld
    lvrlsavslyaitqkrtwsvrdlysamltmsandaaetlgdrldgadfpkemnnqakklg
    msskttfvsasgldvdgksavsttkdlfllssklisthpevlettskptvttdkgakles
    tndllgsiqgldglktgftdeagycfigtaerggkrvisivldagtaekrfkdteklmev
    gfk
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >5zqcC (C:)
    hhhhhhdydipttenlyfqgamgssteqpnlylsanaaavysvengealyeqnadkvmpi
    aslsklmtaflvleavdnnelswdekldlvrlddpsavslyaitqkrtwsvrdlysamlt
    msandaaetlgdrldgadfpkemnnqakklgmsskttfvsasgldvdgksavsttkdlfl
    lssklisthpevlettskptvttdkgaklestndllgsiqgldglktgftdeagycfigt
    aerggkrvisivldagtaekrfkdteklmevgfked
    

    Sequence, based on observed residues (ATOM records): (download)
    >5zqcC (C:)
    qpnlylsanaaavysvengealyeqnadkvmpiaslsklmtaflvleavdnnelswdekl
    dlvrldavslyaitqkrtwsvrdlysamltmsandaaetlgdrldgadfpkemnnqakkl
    gmsskttfvsasgldvdgksavsttkdlfllssklisthpevlettskptvttdkgakle
    stndllgsiqgldglktgftdeagycfigtaerggkrvisivldagtaekrfkdteklme
    vgfk
    

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >5zqcD (D:)
    hhhhhhdydipttenlyfqgamgssteqpnlylsanaaavysvengealyeqnadkvmpi
    aslsklmtaflvleavdnnelswdekldlvrlddpsavslyaitqkrtwsvrdlysamlt
    msandaaetlgdrldgadfpkemnnqakklgmsskttfvsasgldvdgksavsttkdlfl
    lssklisthpevlettskptvttdkgaklestndllgsiqgldglktgftdeagycfigt
    aerggkrvisivldagtaekrfkdteklmevgfked
    

    Sequence, based on observed residues (ATOM records): (download)
    >5zqcD (D:)
    eqpnlylsanaaavysvengealyeqnadkvmpiaslsklmtaflvleavdnnelswdek
    ldlvrlddpsavslyaitqkrtwsvrdlysamltmsandaaetlgdrldgadfpkemnnq
    akklgmsskttfvsasgldvdgksavsttkdlfllssklisthpevlettskptvttdkg
    aklestndllgsiqgldglktgftdeagycfigtaerggkrvisivldagtaekrfkdte
    klmevgfk