SCOPe 2.07: Structural Classification of Proteins

PDB entry 5zcq

View 5zcq on RCSB PDB site
Description: Azide-bound cytochrome c oxidase structure determined using the crystals exposed to 10 mM azide solution for 2 days
Class: oxidoreductase
Keywords: metalloenzyme cytochrome c oxidase proton pump bioenergetics heme copper, MEMBRANE PROTEIN, OXIDOREDUCTASE
Deposited on 2018-02-19, released 2018-08-15
The last revision prior to the SCOPe 2.07 freeze date was dated 2018-08-15, with a file datestamp of 2018-08-10.
Experiment type: XRAY
Resolution: 1.65 Å
R-factor: N/A
AEROSPACI score: 0.42 (click here for full SPACI score report)

Chains and heterogens:

Chain 'A':
Compound: Cytochrome c oxidase subunit 1
Species: Bos taurus [TaxId:9913]
Database cross-references and differences (RAF-indexed):
- Uniprot P00396 (0-513)
Domains in SCOPe 2.07: d5zcqa_
Chain 'B':
Compound: Cytochrome c oxidase subunit 2
Species: Bos taurus [TaxId:9913]
Database cross-references and differences (RAF-indexed):
- Uniprot P68530 (0-226)
Chain 'C':
Compound: Cytochrome c oxidase subunit 3
Species: Bos taurus [TaxId:9913]
Database cross-references and differences (RAF-indexed):
- Uniprot P00415 (Start-260)
Chain 'D':
Compound: cytochrome c oxidase subunit 4 isoform 1, mitochondrial
Species: Bos taurus [TaxId:9913]
Database cross-references and differences (RAF-indexed):
- Uniprot P00423 (Start-146)
Domains in SCOPe 2.07: d5zcqd_
Chain 'E':
Compound: cytochrome c oxidase subunit 5a, mitochondrial
Species: Bos taurus [TaxId:9913]
Database cross-references and differences (RAF-indexed):
- Uniprot P00426 (Start-108)
Domains in SCOPe 2.07: d5zcqe_
Chain 'F':
Compound: cytochrome c oxidase subunit 5b, mitochondrial
Species: Bos taurus [TaxId:9913]
Database cross-references and differences (RAF-indexed):
- Uniprot P00428 (0-97)
Chain 'G':
Compound: Cytochrome c oxidase subunit 6A2, mitochondrial
Species: Bos taurus [TaxId:9913]
Database cross-references and differences (RAF-indexed):
- Uniprot P07471 (0-End)
Domains in SCOPe 2.07: d5zcqg_
Chain 'H':
Compound: Cytochrome c oxidase subunit 6B1
Species: Bos taurus [TaxId:9913]
Database cross-references and differences (RAF-indexed):
- Uniprot P00429 (Start-84)
Domains in SCOPe 2.07: d5zcqh_
Chain 'I':
Compound: Cytochrome c oxidase subunit 6C
Species: Bos taurus [TaxId:9913]
Database cross-references and differences (RAF-indexed):
- Uniprot P04038 (0-72)
Domains in SCOPe 2.07: d5zcqi_
Chain 'J':
Compound: cytochrome c oxidase subunit 7a1, mitochondrial
Species: Bos taurus [TaxId:9913]
Database cross-references and differences (RAF-indexed):
- Uniprot P07470 (0-End)
Domains in SCOPe 2.07: d5zcqj_
Chain 'K':
Compound: cytochrome c oxidase subunit 7b, mitochondrial
Species: Bos taurus [TaxId:9913]
Database cross-references and differences (RAF-indexed):
- Uniprot P13183
Domains in SCOPe 2.07: d5zcqk_
Chain 'L':
Compound: cytochrome c oxidase subunit 7c, mitochondrial
Species: Bos taurus [TaxId:9913]
Database cross-references and differences (RAF-indexed):
- Uniprot P00430 (Start-46)
Domains in SCOPe 2.07: d5zcql_
Chain 'M':
Compound: cytochrome c oxidase subunit 8b, mitochondrial
Species: Bos taurus [TaxId:9913]
Database cross-references and differences (RAF-indexed):
- Uniprot P10175 (0-End)
Domains in SCOPe 2.07: d5zcqm_
Chain 'N':
Compound: Cytochrome c oxidase subunit 1
Species: Bos taurus [TaxId:9913]
Database cross-references and differences (RAF-indexed):
- Uniprot P00396 (0-513)
Domains in SCOPe 2.07: d5zcqn_
Chain 'O':
Compound: Cytochrome c oxidase subunit 2
Species: Bos taurus [TaxId:9913]
Database cross-references and differences (RAF-indexed):
- Uniprot P68530 (0-226)
Chain 'P':
Compound: Cytochrome c oxidase subunit 3
Species: Bos taurus [TaxId:9913]
Database cross-references and differences (RAF-indexed):
- Uniprot P00415 (Start-260)
Chain 'Q':
Compound: cytochrome c oxidase subunit 4 isoform 1, mitochondrial
Species: Bos taurus [TaxId:9913]
Database cross-references and differences (RAF-indexed):
- Uniprot P00423 (Start-146)
Domains in SCOPe 2.07: d5zcqq_
Chain 'R':
Compound: cytochrome c oxidase subunit 5a, mitochondrial
Species: Bos taurus [TaxId:9913]
Database cross-references and differences (RAF-indexed):
- Uniprot P00426 (Start-108)
Domains in SCOPe 2.07: d5zcqr_
Chain 'S':
Compound: cytochrome c oxidase subunit 5b, mitochondrial
Species: Bos taurus [TaxId:9913]
Database cross-references and differences (RAF-indexed):
- Uniprot P00428 (0-97)
Chain 'T':
Compound: Cytochrome c oxidase subunit 6A2, mitochondrial
Species: Bos taurus [TaxId:9913]
Database cross-references and differences (RAF-indexed):
- Uniprot P07471 (0-End)
Chain 'U':
Compound: Cytochrome c oxidase subunit 6B1
Species: Bos taurus [TaxId:9913]
Database cross-references and differences (RAF-indexed):
- Uniprot P00429 (Start-84)
Chain 'V':
Compound: Cytochrome c oxidase subunit 6C
Species: Bos taurus [TaxId:9913]
Database cross-references and differences (RAF-indexed):
- Uniprot P04038 (0-72)
Chain 'W':
Compound: cytochrome c oxidase subunit 7a1, mitochondrial
Species: Bos taurus [TaxId:9913]
Database cross-references and differences (RAF-indexed):
- Uniprot P07470 (0-End)
Chain 'X':
Compound: cytochrome c oxidase subunit 7b, mitochondrial
Species: Bos taurus [TaxId:9913]
Database cross-references and differences (RAF-indexed):
- Uniprot P13183
Chain 'Y':
Compound: cytochrome c oxidase subunit 7c, mitochondrial
Species: Bos taurus [TaxId:9913]
Database cross-references and differences (RAF-indexed):
- Uniprot P00430 (Start-46)
Chain 'Z':
Compound: cytochrome c oxidase subunit 8b, mitochondrial
Species: Bos taurus [TaxId:9913]
Database cross-references and differences (RAF-indexed):
- Uniprot P10175 (0-End)
Heterogens: HEA, CU, MG, NA, AZI, TGL, PGV, EDO, CHD, CUA, PSC, DMU, UNX, CDL, PEK, ZN, HOH

PDB Chain Sequences:

Chain 'A':
Sequence; same for both SEQRES and ATOM records: (download)

>5zcqA (A:)
mfinrwlfstnhkdigtlyllfgawagmvgtalslliraelgqpgtllgddqiynvvvta
hafvmiffmvmpimiggfgnwlvplmigapdmafprmnnmsfwllppsfllllassmvea
gagtgwtvypplagnlahagasvdltifslhlagvssilgainfittiinmkppamsqyq
tplfvwsvmitavllllslpvlaagitmlltdrnlnttffdpagggdpilyqhlfwffgh
pevyililpgfgmishivtyysgkkepfgymgmvwammsigflgfivwahhmftvgmdvd
trayftsatmiiaiptgvkvfswlatlhggnikwspammwalgfiflftvggltgivlan
ssldivlhdtyyvvahfhyvlsmgavfaimggfvhwfplfsgytlndtwakihfaimfvg
vnmtffpqhflglsgmprrysdypdaytmwntissmgsfisltavmlmvfiiweafaskr
evltvdltttnlewlngcpppyhtfeeptyvnlk

Chain 'B':
No sequence available.
Chain 'C':
No sequence available.

Chain 'D':
Sequence, based on SEQRES records: (download)

>5zcqD (D:)
ahgsvvksedyalpsyvdrrdyplpdvahvknlsasqkalkekekaswsslsidekvely
rlkfkesfaemnrstnewktvvgaamffigftallliwekhyvygpiphtfeeewvakqt
krmldmkvapiqgfsakwdydknewkk

Sequence, based on observed residues (ATOM records): (download)

>5zcqD (D:)
svvksedyalpsyvdrrdyplpdvahvknlsasqkalkekekaswsslsidekvelyrlk
fkesfaemnrstnewktvvgaamffigftallliwekhyvygpiphtfeeewvakqtkrm
ldmkvapiqgfsakwdydknewkk

Chain 'E':
Sequence, based on SEQRES records: (download)

>5zcqE (E:)
shgshetdeefdarwvtyfnkpdidawelrkgmntlvgydlvpepkiidaalracrrlnd
fasavrilevvkdkagphkeiypyviqelrptlnelgistpeelgldkv

Sequence, based on observed residues (ATOM records): (download)

>5zcqE (E:)
hetdeefdarwvtyfnkpdidawelrkgmntlvgydlvpepkiidaalracrrlndfasa
vrilevvkdkagphkeiypyviqelrptlnelgistpeelgldkv

Chain 'F':
No sequence available.

Chain 'G':
Sequence, based on SEQRES records: (download)

>5zcqG (G:)
asaakgdhggtgartwrfltfglalpsvalctlnswlhsghrerpafipyhhlrirtkpf
swgdgnhtffhnprvnplptgyekp

Sequence, based on observed residues (ATOM records): (download)

>5zcqG (G:)
asaakgdhggtgartwrfltfglalpsvalctlnswlhsghrerpafipyhhlrirtkpf
swgdgnhtffhnprvnplptgyek

Chain 'H':
Sequence, based on SEQRES records: (download)

>5zcqH (H:)
aediqakiknyqtapfdsrfpnqnqtrncwqnyldfhrcekamtakggdvsvcewyrrvy
kslcpiswvstwddrraegtfpgki

Sequence, based on observed residues (ATOM records): (download)

>5zcqH (H:)
kiknyqtapfdsrfpnqnqtrncwqnyldfhrcekamtakggdvsvcewyrrvykslcpi
swvstwddrraegtfpgki

Chain 'I':
Sequence; same for both SEQRES and ATOM records: (download)

>5zcqI (I:)
stalakpqmrgllarrlrfhivgafmvslgfatfykfavaekrkkayadfyrnydsmkdf
eemrkagifqsak

Chain 'J':
Sequence, based on SEQRES records: (download)

>5zcqJ (J:)
fenrvaekqklfqednglpvhlkggatdnilyrvtmtlclggtlyslyclgwasfphkk

Sequence, based on observed residues (ATOM records): (download)

>5zcqJ (J:)
fenrvaekqklfqednglpvhlkggatdnilyrvtmtlclggtlyslyclgwasfphk

Chain 'K':
Sequence, based on SEQRES records: (download)

>5zcqK (K:)
ihqkrapdfhdkygnavlasgatfcvavwvymatqigiewnpspvgrvtpkewreq

Sequence, based on observed residues (ATOM records): (download)

>5zcqK (K:)
apdfhdkygnavlasgatfcvavwvymatqigiewnpspvgrvtpkewr

Chain 'L':
Sequence, based on SEQRES records: (download)

>5zcqL (L:)
shyeegpgknipfsvenkwrllammtlffgsgfaapffivrhqllkk

Sequence, based on observed residues (ATOM records): (download)

>5zcqL (L:)
hyeegpgknipfsvenkwrllammtlffgsgfaapffivrhqllkk

Chain 'M':
Sequence, based on SEQRES records: (download)

>5zcqM (M:)
itakpaktptspkeqaiglsvtflsfllpagwvlyhldnykkssaa

Sequence, based on observed residues (ATOM records): (download)

>5zcqM (M:)
itakpaktptspkeqaiglsvtflsfllpagwvlyhldnykks

Chain 'N':
Sequence; same for both SEQRES and ATOM records: (download)

>5zcqN (N:)
mfinrwlfstnhkdigtlyllfgawagmvgtalslliraelgqpgtllgddqiynvvvta
hafvmiffmvmpimiggfgnwlvplmigapdmafprmnnmsfwllppsfllllassmvea
gagtgwtvypplagnlahagasvdltifslhlagvssilgainfittiinmkppamsqyq
tplfvwsvmitavllllslpvlaagitmlltdrnlnttffdpagggdpilyqhlfwffgh
pevyililpgfgmishivtyysgkkepfgymgmvwammsigflgfivwahhmftvgmdvd
trayftsatmiiaiptgvkvfswlatlhggnikwspammwalgfiflftvggltgivlan
ssldivlhdtyyvvahfhyvlsmgavfaimggfvhwfplfsgytlndtwakihfaimfvg
vnmtffpqhflglsgmprrysdypdaytmwntissmgsfisltavmlmvfiiweafaskr
evltvdltttnlewlngcpppyhtfeeptyvnlk

Chain 'O':
No sequence available.
Chain 'P':
No sequence available.

Chain 'Q':
Sequence, based on SEQRES records: (download)

>5zcqQ (Q:)
ahgsvvksedyalpsyvdrrdyplpdvahvknlsasqkalkekekaswsslsidekvely
rlkfkesfaemnrstnewktvvgaamffigftallliwekhyvygpiphtfeeewvakqt
krmldmkvapiqgfsakwdydknewkk

Sequence, based on observed residues (ATOM records): (download)

>5zcqQ (Q:)
svvksedyalpsyvdrrdyplpdvahvknlsasqkalkekekaswsslsidekvelyrlk
fkesfaemnrstnewktvvgaamffigftallliwekhyvygpiphtfeeewvakqtkrm
ldmkvapiqgfsakwdydknewkk

Chain 'R':
Sequence, based on SEQRES records: (download)

>5zcqR (R:)
shgshetdeefdarwvtyfnkpdidawelrkgmntlvgydlvpepkiidaalracrrlnd
fasavrilevvkdkagphkeiypyviqelrptlnelgistpeelgldkv

Sequence, based on observed residues (ATOM records): (download)

>5zcqR (R:)
hetdeefdarwvtyfnkpdidawelrkgmntlvgydlvpepkiidaalracrrlndfasa
vrilevvkdkagphkeiypyviqelrptlnelgistpeelgldkv

Chain 'S':
No sequence available.
Chain 'T':
No sequence available.
Chain 'U':
No sequence available.
Chain 'V':
No sequence available.
Chain 'W':
No sequence available.
Chain 'X':
No sequence available.
Chain 'Y':
No sequence available.
Chain 'Z':
No sequence available.