PDB entry 5z16

View 5z16 on RCSB PDB site
Description: A novel dimeric isocitrate dehydrogenase from Acinetobacter baumannii
Class: oxidoreductase
Keywords: isocitrate dehydrogenase, TCA cycle, glyoxylate bypass, pathogenesis, OXIDOREDUCTASE
Deposited on 2017-12-25, released 2019-02-20
The last revision prior to the SCOPe 2.07 freeze date was dated 2019-02-20, with a file datestamp of 2019-02-15.
Experiment type: XRAY
Resolution: 3 Å
R-factor: N/A
AEROSPACI score: 0.13 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: isocitrate dehydrogenase
    Species: ACINETOBACTER BAUMANNII [TaxId:470]
    Gene: icd_2, A7M79_07490, A7N09_00330, APD06_04285, APD31_03935, AZE33_14960, B4R90_02155, B9X91_18100, B9X95_15090, BGC29_03310, BWP00_11420, CAS83_18605, CAT78_13885, CEJ63_01165, CHH39_15940, CHQ89_08020, IX87_09060, LV38_02052
    Database cross-references and differences (RAF-indexed):
    • Uniprot V5VCI0
      • conflict (634)
    Domains in SCOPe 2.07: d5z16a_
  • Chain 'B':
    Compound: isocitrate dehydrogenase
    Species: ACINETOBACTER BAUMANNII [TaxId:470]
    Gene: icd_2, A7M79_07490, A7N09_00330, APD06_04285, APD31_03935, AZE33_14960, B4R90_02155, B9X91_18100, B9X95_15090, BGC29_03310, BWP00_11420, CAS83_18605, CAT78_13885, CEJ63_01165, CHH39_15940, CHQ89_08020, IX87_09060, LV38_02052
    Database cross-references and differences (RAF-indexed):
    • Uniprot V5VCI0
      • conflict (634)
    Domains in SCOPe 2.07: d5z16b_
  • Heterogens: PO4, MG, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5z16A (A:)
hhhhhhmagekstiiytltdeapllatysllpiietftkpagieivksdisvaarvlaef
adylseeqkvsdnlaelgrltqdpdtniiklpnisasvaqltacikelqskgyaipdype
npateeektikarygkclgsavnpvlregnsdrrapaavknyakkhphsmsewkqwsqth
vshmeegdfyhgeksmtldrprnvkmelitnsgksivlkpkvalqegeiidsmfmskkal
cdfyekqlddcreagilfslhvkatmmkvshpivfghcvkiyykeafekhgklfdelgin
vnngmaglyekietlptslreeiiedlhacqehrpalamvdsakgitnfhspndiivdas
mpamiraggkmwgadgkqydakavmpestfariyqeminfckwhgnfdpktmgtvpnvgl
maqkaeeygshdktfeipeagianitdldtgevlltqnveegdiwrmcqvkdapirdwvk
lavtrarnsgmpaifwldpyrphenelikkvqkylkdhdttgldiqimsqvramrytler
vvrgldtisvtgnilrdyltdlfpimelgtsakmlsivplmagggmyetgaggsapkhvq
qlveenhlrwdslgeflalavsleemgikennartkllaktldeatgklldndkspsrrt
geldnrgshfylslywaealaaqnedaelkakfaplakalaeneqkivaelaqvqgkpad
iggyyavdpakvsavmrpsatfnaalstvqa

    Sequence, based on observed residues (ATOM records): (download) 
    >5z16A (A:)
kstiiytltdeapllatysllpiietftkpagieivksdisvaarvlaefadylseeqkv
sdnlaelgrltqdpdtniiklpnisasvaqltacikelqskgyaipdypenpateeekti
karygkclgsavnpvlregnsdrrapaavknyakkhphsmsewkqwsqthvshmeegdfy
hgeksmtldrprnvkmelitnsgksivlkpkvalqegeiidsmfmskkalcdfyekqldd
creagilfslhvkatmmkvshpivfghcvkiyykeafekhgklfdelginvnngmaglye
kietlptslreeiiedlhacqehrpalamvdsakgitnfhspndiivdasmpamiraggk
mwgadgkqydakavmpestfariyqeminfckwhgnfdpktmgtvpnvglmaqkaeeygs
hdktfeipeagianitdldtgevlltqnveegdiwrmcqvkdapirdwvklavtrarnsg
mpaifwldpyrphenelikkvqkylkdhdttgldiqimsqvramrytlervvrgldtisv
tgnilrdyltdlfpimelgtsakmlsivplmagggmyetgaggsapkhvqqlveenhlrw
dslgeflalavsleemgikennartkllaktldeatgklldndkspsrrtgeldnrgshf
ylslywaealaaqnedaelkakfaplakalaeneqkivaelaqvqgkpadiggyyavdpa
kvsavmrpsatfnaa

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >5z16B (B:)
hhhhhhmagekstiiytltdeapllatysllpiietftkpagieivksdisvaarvlaef
adylseeqkvsdnlaelgrltqdpdtniiklpnisasvaqltacikelqskgyaipdype
npateeektikarygkclgsavnpvlregnsdrrapaavknyakkhphsmsewkqwsqth
vshmeegdfyhgeksmtldrprnvkmelitnsgksivlkpkvalqegeiidsmfmskkal
cdfyekqlddcreagilfslhvkatmmkvshpivfghcvkiyykeafekhgklfdelgin
vnngmaglyekietlptslreeiiedlhacqehrpalamvdsakgitnfhspndiivdas
mpamiraggkmwgadgkqydakavmpestfariyqeminfckwhgnfdpktmgtvpnvgl
maqkaeeygshdktfeipeagianitdldtgevlltqnveegdiwrmcqvkdapirdwvk
lavtrarnsgmpaifwldpyrphenelikkvqkylkdhdttgldiqimsqvramrytler
vvrgldtisvtgnilrdyltdlfpimelgtsakmlsivplmagggmyetgaggsapkhvq
qlveenhlrwdslgeflalavsleemgikennartkllaktldeatgklldndkspsrrt
geldnrgshfylslywaealaaqnedaelkakfaplakalaeneqkivaelaqvqgkpad
iggyyavdpakvsavmrpsatfnaalstvqa

    Sequence, based on observed residues (ATOM records): (download) 
    >5z16B (B:)
stiiytltdeapllatysllpiietftkpagieivksdisvaarvlaefadylseeqkvs
dnlaelgrltqdpdtniiklpnisasvaqltacikelqskgyaipdypenpateeektik
arygkclgsavnpvlregnsdrrapaavknyakkhphsmsewkqwsqthvshmeegdfyh
geksmtldrprnvkmelitnsgksivlkpkvalqegeiidsmfmskkalcdfyekqlddc
reagilfslhvkatmmkvshpivfghcvkiyykeafekhgklfdelginvnngmaglyek
ietlptslreeiiedlhacqehrpalamvdsakgitnfhspndiivdasmpamiraggkm
wgadgkqydakavmpestfariyqeminfckwhgnfdpktmgtvpnvglmaqkaeeygsh
dktfeipeagianitdldtgevlltqnveegdiwrmcqvkdapirdwvklavtrarnsgm
paifwldpyrphenelikkvqkylkdhdttgldiqimsqvramrytlervvrgldtisvt
gnilrdyltdlfpimelgtsakmlsivplmagggmyetgaggsapkhvqqlveenhlrwd
slgeflalavsleemgikennartkllaktldeatgklldndkspsrrtgeldnrgshfy
lslywaealaaqnedaelkakfaplakalaeneqkivaelaqvqgkpadiggyyavdpak
vsavmrpsatfnaalstvq