PDB entry 5ytu

View 5ytu on RCSB PDB site
Description: Structure of human SOD1 complexed with isoproteranol in C2221 space group
Class: oxidoreductase
Keywords: isoproteranol, Complex, Dimer stabilizer, OXIDOREDUCTASE
Deposited on 2017-11-20, released 2018-11-21
The last revision prior to the SCOPe 2.08 freeze date was dated 2018-11-21, with a file datestamp of 2018-11-16.
Experiment type: XRAY
Resolution: 1.9 Å
R-factor: N/A
AEROSPACI score: 0.34 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Superoxide dismutase [Cu-Zn]
    Species: Homo sapiens [TaxId:9606]
    Gene: SOD1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5ytua_
  • Chain 'B':
    Compound: Superoxide dismutase [Cu-Zn]
    Species: Homo sapiens [TaxId:9606]
    Gene: SOD1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5ytub_
  • Chain 'C':
    Compound: Superoxide dismutase [Cu-Zn]
    Species: Homo sapiens [TaxId:9606]
    Gene: SOD1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5ytuc_
  • Chain 'D':
    Compound: Superoxide dismutase [Cu-Zn]
    Species: Homo sapiens [TaxId:9606]
    Gene: SOD1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5ytud_
  • Chain 'E':
    Compound: Superoxide dismutase [Cu-Zn]
    Species: Homo sapiens [TaxId:9606]
    Gene: SOD1
    Database cross-references and differences (RAF-indexed):
    • Uniprot P00441 (26-179)
      • expression tag (25)
    Domains in SCOPe 2.08: d5ytue1, d5ytue2
  • Chain 'F':
    Compound: Superoxide dismutase [Cu-Zn]
    Species: Homo sapiens [TaxId:9606]
    Gene: SOD1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5ytuf_
  • Chain 'G':
    Compound: Superoxide dismutase [Cu-Zn]
    Species: Homo sapiens [TaxId:9606]
    Gene: SOD1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5ytug_
  • Chain 'H':
    Compound: Superoxide dismutase [Cu-Zn]
    Species: Homo sapiens [TaxId:9606]
    Gene: SOD1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5ytuh_
  • Chain 'I':
    Compound: Superoxide dismutase [Cu-Zn]
    Species: Homo sapiens [TaxId:9606]
    Gene: SOD1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5ytui_
  • Chain 'J':
    Compound: Superoxide dismutase [Cu-Zn]
    Species: Homo sapiens [TaxId:9606]
    Gene: SOD1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5ytuj_
  • Heterogens: 5FW, ZN, TAM, S4P, GOL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >5ytuA (A:)
    mkhhhhhhpmsdydipttenlyfqgamatkavcvlkgdgpvqgiinfeqkesngpvkvwg
    sikglteglhgfhvhefgdntagctsagphfnplsrkhggpkdeerhvgdlgnvtadkdg
    vadvsiedsvislsgdhciigrtlvvhekaddlgkggneestktgnagsrlacgvigiaq
    

    Sequence, based on observed residues (ATOM records): (download)
    >5ytuA (A:)
    matkavcvlkgdgpvqgiinfeqkesngpvkvwgsikglteglhgfhvhefgdntagcts
    agphfnplsrkhggpkdeerhvgdlgnvtadkdgvadvsiedsvislsgdhciigrtlvv
    hekaddlgkggneestktgnagsrlacgvigiaq
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >5ytuB (B:)
    mkhhhhhhpmsdydipttenlyfqgamatkavcvlkgdgpvqgiinfeqkesngpvkvwg
    sikglteglhgfhvhefgdntagctsagphfnplsrkhggpkdeerhvgdlgnvtadkdg
    vadvsiedsvislsgdhciigrtlvvhekaddlgkggneestktgnagsrlacgvigiaq
    

    Sequence, based on observed residues (ATOM records): (download)
    >5ytuB (B:)
    matkavcvlkgdgpvqgiinfeqkesngpvkvwgsikglteglhgfhvhefgdntagcts
    agphfnplsrkhggpkdeerhvgdlgnvtadkdgvadvsiedsvislsgdhciigrtlvv
    hekaddlgkggneestktgnagsrlacgvigiaq
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >5ytuC (C:)
    mkhhhhhhpmsdydipttenlyfqgamatkavcvlkgdgpvqgiinfeqkesngpvkvwg
    sikglteglhgfhvhefgdntagctsagphfnplsrkhggpkdeerhvgdlgnvtadkdg
    vadvsiedsvislsgdhciigrtlvvhekaddlgkggneestktgnagsrlacgvigiaq
    

    Sequence, based on observed residues (ATOM records): (download)
    >5ytuC (C:)
    matkavcvlkgdgpvqgiinfeqkesngpvkvwgsikglteglhgfhvhefgdntagcts
    agphfnplsrkhggpkdeerhvgdlgnvtadkdgvadvsiedsvislsgdhciigrtlvv
    hekaddlgkggneestktgnagsrlacgvigiaq
    

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >5ytuD (D:)
    mkhhhhhhpmsdydipttenlyfqgamatkavcvlkgdgpvqgiinfeqkesngpvkvwg
    sikglteglhgfhvhefgdntagctsagphfnplsrkhggpkdeerhvgdlgnvtadkdg
    vadvsiedsvislsgdhciigrtlvvhekaddlgkggneestktgnagsrlacgvigiaq
    

    Sequence, based on observed residues (ATOM records): (download)
    >5ytuD (D:)
    matkavcvlkgdgpvqgiinfeqkesngpvkvwgsikglteglhgfhvhefgdntagcts
    agphfnplsrkhggpkdeerhvgdlgnvtadkdgvadvsiedsvislsgdhciigrtlvv
    hekaddlgkggneestktgnagsrlacgvigiaq
    

  • Chain 'E':
    Sequence, based on SEQRES records: (download)
    >5ytuE (E:)
    mkhhhhhhpmsdydipttenlyfqgamatkavcvlkgdgpvqgiinfeqkesngpvkvwg
    sikglteglhgfhvhefgdntagctsagphfnplsrkhggpkdeerhvgdlgnvtadkdg
    vadvsiedsvislsgdhciigrtlvvhekaddlgkggneestktgnagsrlacgvigiaq
    

    Sequence, based on observed residues (ATOM records): (download)
    >5ytuE (E:)
    amatkavcvlkgdgpvqgiinfeqkesngpvkvwgsikglteglhgfhvhefgdntagct
    sagphfnplsrkhggpkdeerhvgdlgnvtadkdgvadvsiedsvislsgdhciigrtlv
    vhekaddlgkggneestktgnagsrlacgvigiaq
    

  • Chain 'F':
    Sequence, based on SEQRES records: (download)
    >5ytuF (F:)
    mkhhhhhhpmsdydipttenlyfqgamatkavcvlkgdgpvqgiinfeqkesngpvkvwg
    sikglteglhgfhvhefgdntagctsagphfnplsrkhggpkdeerhvgdlgnvtadkdg
    vadvsiedsvislsgdhciigrtlvvhekaddlgkggneestktgnagsrlacgvigiaq
    

    Sequence, based on observed residues (ATOM records): (download)
    >5ytuF (F:)
    matkavcvlkgdgpvqgiinfeqkesngpvkvwgsikglteglhgfhvhefgdntagcts
    agphfnplsrkhggpkdeerhvgdlgnvtadkdgvadvsiedsvislsgdhciigrtlvv
    hekaddlgkggneestktgnagsrlacgvigiaq
    

  • Chain 'G':
    Sequence, based on SEQRES records: (download)
    >5ytuG (G:)
    mkhhhhhhpmsdydipttenlyfqgamatkavcvlkgdgpvqgiinfeqkesngpvkvwg
    sikglteglhgfhvhefgdntagctsagphfnplsrkhggpkdeerhvgdlgnvtadkdg
    vadvsiedsvislsgdhciigrtlvvhekaddlgkggneestktgnagsrlacgvigiaq
    

    Sequence, based on observed residues (ATOM records): (download)
    >5ytuG (G:)
    atkavcvlkgdgpvqgiinfeqkesngpvkvwgsikglteglhgfhvhefgdntagctsa
    gphfnprhvgdlgnvtadkdgvadvsiedsvislsgdhciigrtlvvhekaddsrlacgv
    igiaq
    

  • Chain 'H':
    Sequence, based on SEQRES records: (download)
    >5ytuH (H:)
    mkhhhhhhpmsdydipttenlyfqgamatkavcvlkgdgpvqgiinfeqkesngpvkvwg
    sikglteglhgfhvhefgdntagctsagphfnplsrkhggpkdeerhvgdlgnvtadkdg
    vadvsiedsvislsgdhciigrtlvvhekaddlgkggneestktgnagsrlacgvigiaq
    

    Sequence, based on observed residues (ATOM records): (download)
    >5ytuH (H:)
    matkavcvlkgdgpvqgiinfeqkesngpvkvwgsikglteglhgfhvhefgdntagcts
    agphfnplsrkhggpkdeerhvgdlgnvtadkdgvadvsiedsvislsgdhciigrtlvv
    hekaddlgkggneestktgnagsrlacgvigiaq
    

  • Chain 'I':
    Sequence, based on SEQRES records: (download)
    >5ytuI (I:)
    mkhhhhhhpmsdydipttenlyfqgamatkavcvlkgdgpvqgiinfeqkesngpvkvwg
    sikglteglhgfhvhefgdntagctsagphfnplsrkhggpkdeerhvgdlgnvtadkdg
    vadvsiedsvislsgdhciigrtlvvhekaddlgkggneestktgnagsrlacgvigiaq
    

    Sequence, based on observed residues (ATOM records): (download)
    >5ytuI (I:)
    tkavcvlkgdgpvqgiinfeqkesngpvkvwgsikglteglhgfhvhefgdntagctsag
    phfnplsrkhggpkdeerhvgdlgnvtadkdgvadvsiedsvislsgdhciigrtlvvhe
    kaddlgkggneestktgnagsrlacgvigiaq
    

  • Chain 'J':
    Sequence, based on SEQRES records: (download)
    >5ytuJ (J:)
    mkhhhhhhpmsdydipttenlyfqgamatkavcvlkgdgpvqgiinfeqkesngpvkvwg
    sikglteglhgfhvhefgdntagctsagphfnplsrkhggpkdeerhvgdlgnvtadkdg
    vadvsiedsvislsgdhciigrtlvvhekaddlgkggneestktgnagsrlacgvigiaq
    

    Sequence, based on observed residues (ATOM records): (download)
    >5ytuJ (J:)
    tkavcvlkgdgpvqgiinfeqkesngpvkvwgsikglteglhgfhvhefgdntagctsag
    phfnplsrkhggpkdeerhvgdlgnvtadkdgvadvsiedsvislsgdhciigrtlvvhe
    kaddlgkggneestktgnagsrlacgvigiaq