PDB entry 5ysu
View 5ysu on RCSB PDB site
Description: Plumbagin in complex with CRM1-RanM189D-RanBP1
Class: transport protein
Keywords: Active Ran, Complex, TRANSPORT PROTEIN, inhibitor
Deposited on
2017-11-15, released
2018-11-21
The last revision prior to the SCOPe 2.07 freeze date was dated
2018-11-21, with a file datestamp of
2018-11-16.
Experiment type: XRAY
Resolution: 2.3 Å
R-factor: N/A
AEROSPACI score: 0.24
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: GTP-binding nuclear protein ran
Species: Homo sapiens [TaxId:9606]
Gene: RAN, ARA24, OK/SW-cl.81
Database cross-references and differences (RAF-indexed):
- Uniprot P62826 (Start-215)
- engineered mutation (188)
Domains in SCOPe 2.07: d5ysua_ - Chain 'B':
Compound: Ran-specific GTPase-activating protein 1
Species: Saccharomyces cerevisiae S288c [TaxId:559292]
Gene: YRB1, CST20, HTN1, SFO1, YDR002W, YD8119.08
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d5ysub_ - Chain 'C':
Compound: Exportin-1,Exportin-1
Species: Saccharomyces cerevisiae [TaxId:559292]
Gene: CRM1, KAP124, XPO1, YGR218W, G8514
Database cross-references and differences (RAF-indexed):
- Uniprot P30822 (2-377)
- Uniprot P30822 (378-End)
- engineered mutation (501)
- engineered mutation (503-505)
- see sequence details (986)
- Heterogens: GTP, MG, CL, NO3, 90R, NA, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>5ysuA (A:)
maaqgepqvqfklvlvgdggtgkttfvkrhltgefekkyvatlgvevhplvfhtnrgpik
fnvwdtagqekfgglrdgyyiqaqcaiimfdvtsrvtyknvpnwhrdlvrvcenipivlc
gnkvdikdrkvkaksivfhrkknlqyydisaksnynfekpflwlarkligdpnlefvamp
alappevvddpalaaqyehdlevaqttalpdedddl
Sequence, based on observed residues (ATOM records): (download)
>5ysuA (A:)
vqfklvlvgdggtgkttfvkrhltgefekkyvatlgvevhplvfhtnrgpikfnvwdtag
qekfgglrdgyyiqaqcaiimfdvtsrvtyknvpnwhrdlvrvcenipivlcgnkvdikd
rkvkaksivfhrkknlqyydisaksnynfekpflwlarkligdpnlefvampalappevv
ddpalaaqyehdlevaqttalpdedddl
- Chain 'B':
Sequence, based on SEQRES records: (download)
>5ysuB (B:)
dihfepvvhlekvdvktmeedeevlykvraklfrfdadakewkergtgdckflknkktnk
vrilmrrdktlkicanhiiapeytlkpnvgsdrswvyactadiaegeaeaftfairfgsk
enadkfkeefekaqeinkk
Sequence, based on observed residues (ATOM records): (download)
>5ysuB (B:)
fepvvhktmeedeevlykvraklfrfdadakewkergtgdckflknkktnkvrilmrrdk
tlkicanhiiapeytlkpnvgsdrswvyactadiaegeaeaftfairfgskenadkfkee
fekaqeinkk
- Chain 'C':
No sequence available.