PDB entry 5ysf

View 5ysf on RCSB PDB site
Description: Crystal structure of beta-1,2-glucooligosaccharide binding protein in complex with sophoropentaose
Class: sugar binding protein
Keywords: solute-binding protein, protein-carbohydrate complex, beta-1, 2-glucooligosaccharide, sophorooligosaccharide, alpha/beta domain, SUGAR BINDING PROTEIN
Deposited on 2017-11-14, released 2018-05-02
The last revision prior to the SCOPe 2.07 freeze date was dated 2018-05-02, with a file datestamp of 2018-04-27.
Experiment type: XRAY
Resolution: 1.9 Å
R-factor: N/A
AEROSPACI score: 0.34 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Lin1841 protein
    Species: Listeria innocua serovar 6a (strain ATCC BAA-680 / CLIP 11262) [TaxId:272626]
    Gene: lin1841
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q92AS8 (Start-388)
      • expression tag (389-395)
    Domains in SCOPe 2.07: d5ysfa1, d5ysfa2
  • Chain 'B':
    Compound: Lin1841 protein
    Species: Listeria innocua serovar 6a (strain ATCC BAA-680 / CLIP 11262) [TaxId:272626]
    Gene: lin1841
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q92AS8 (Start-388)
      • expression tag (389-396)
    Domains in SCOPe 2.07: d5ysfb1, d5ysfb2
  • Heterogens: MPD, MG, BGC, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5ysfA (A:)
mddanssdskvlnvwamgdeakslkelaqkftkdtgievkvqvipwanahdklltavask
sgpdvvqmgttwmpefveagallditkdveksknmnsdlffpgsvkttqfdgktygvpwy
aetrvlfyrtdllkkvgyneapktwdelsdaalklskrgkdmygfaidpneqttgfifgr
qngsplfdkdgtpvfnkkpfvdtvtyldsfikngsapdtdlgldasqsfggdgivpmfms
gpwmvntlkdtapdidgkwatavlpkkennesslgganlsifkysnkkddalkfmdymsq
pdvqlswlkdtnsmparmdaweddmlkndpyykvfgeqmktaepmplipqfeeiaqlygk
sweqiyrggadvqtqmdtfndqveallkklehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >5ysfA (A:)
skvlnvwamgdeakslkelaqkftkdtgievkvqvipwanahdklltavasksgpdvvqm
gttwmpefveagallditkdveksknmnsdlffpgsvkttqfdgktygvpwyaetrvlfy
rtdllkkvgyneapktwdelsdaalklskrgkdmygfaidpneqttgfifgrqngsplfd
kdgtpvfnkkpfvdtvtyldsfikngsapdtdlgldasqsfggdgivpmfmsgpwmvntl
kdtapdidgkwatavlpkkennesslgganlsifkysnkkddalkfmdymsqpdvqlswl
kdtnsmparmdaweddmlkndpyykvfgeqmktaepmplipqfeeiaqlygksweqiyrg
gadvqtqmdtfndqveallkklehhhhh

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >5ysfB (B:)
mddanssdskvlnvwamgdeakslkelaqkftkdtgievkvqvipwanahdklltavask
sgpdvvqmgttwmpefveagallditkdveksknmnsdlffpgsvkttqfdgktygvpwy
aetrvlfyrtdllkkvgyneapktwdelsdaalklskrgkdmygfaidpneqttgfifgr
qngsplfdkdgtpvfnkkpfvdtvtyldsfikngsapdtdlgldasqsfggdgivpmfms
gpwmvntlkdtapdidgkwatavlpkkennesslgganlsifkysnkkddalkfmdymsq
pdvqlswlkdtnsmparmdaweddmlkndpyykvfgeqmktaepmplipqfeeiaqlygk
sweqiyrggadvqtqmdtfndqveallkklehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >5ysfB (B:)
skvlnvwamgdeakslkelaqkftkdtgievkvqvipwanahdklltavasksgpdvvqm
gttwmpefveagallditkdveksknmnsdlffpgsvkttqfdgktygvpwyaetrvlfy
rtdllkkvgyneapktwdelsdaalklskrgkdmygfaidpneqttgfifgrqngsplfd
kdgtpvfnkkpfvdtvtyldsfikngsapdtdlgldasqsfggdgivpmfmsgpwmvntl
kdtapdidgkwatavlpkkennesslgganlsifkysnkkddalkfmdymsqpdvqlswl
kdtnsmparmdaweddmlkndpyykvfgeqmktaepmplipqfeeiaqlygksweqiyrg
gadvqtqmdtfndqveallkklehhhhhh